Parental gene:

CBX3, ENSPTRG00000019003

Aliases:None
Description:None
Organism:Chimpanzee (Pan troglodytes)
Coordinates:7:24793765..24805597(+)


>ENSPTRG00000019003
ATGGCCTCCAATAAAACTACATTGCAAAAAATGGGAAAAAAACAGAATGGAAAGAGTAAAAAAGTTGAAGAGGCAGAGCC
TGAAGAATTTGTCGTGGAAAAAGTACTAGATCGACGTGTAGTGAATGGGAAAGTGGAATATTTCCTGAAGTGGAAGGGAT
TTACAGATGCTGACAATACTTGGGAACCTGAAGAAAATTTAGATTGTCCAGAATTGATTGAAGCGTTTCTTAACTCTCAG
AAAGCTGGCAAAGAAAAAGATGGTACAAAAAGAAAATCTTTATCTGACAGTGAATCTGATGACAGCAAATCAAAGAAGAA
AAGAGATGCTGCTGACAAACCAAGAGGATTTGCCAGAGGTCTTGATCCTGAAAGAATAATTGGTGCCACAGACAGCAGTG
GAGAATTGATGTTTCTCATGAAATGGAAAGATTCAGATGAGGCAGACTTGGTGCTGGCGAAAGAGGCAAATATGAAGTGT
CCTCAAATTGTAATTGCTTTTTATGAAGAGAGACTAACTTGGCATTCTTGTCCAGAAGATGAAGCTCAATAA

Library Parental gene expression (RPM)
SRP007412_brain_prefrontal_cortex 30 .19 RPM
SRP007412_cerebellum 17 .71 RPM
SRP007412_heart 22 .38 RPM
SRP007412_kidney 31 .98 RPM
SRP007412_liver 21 .93 RPM
SRP007412_testis 73 .66 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000002897 possible_ortholog 11 retrogenes
retro_cfam_1157, retro_cfam_161, retro_cfam_1811, retro_cfam_1823, retro_cfam_1849, retro_cfam_2083, retro_cfam_502, retro_cfam_594, retro_cfam_739, retro_cfam_931, retro_cfam_948,
Callithrix jacchus ENSCJAG00000007952 possible_ortholog 8 retrogenes
retro_cjac_1100, retro_cjac_1414, retro_cjac_1612, retro_cjac_2405, retro_cjac_2623, retro_cjac_2728, retro_cjac_3322, retro_cjac_869,
Loxodonta africana ENSLAFG00000006907 possible_ortholog 3 retrogenes
retro_lafr_661, retro_lafr_687, retro_lafr_776,
Mus musculus ENSMUSG00000029836 possible_ortholog 1 retrogene
retro_mmus_77,
Otolemur garnettii ENSOGAG00000016583 possible_ortholog 1 retrogene
retro_ogar_136,
Ochotona princeps ENSOPRG00000011713 ortholog_one2one 9 retrogenes
retro_opri_103, retro_opri_159, retro_opri_209, retro_opri_300, retro_opri_429, retro_opri_569, retro_opri_598, retro_opri_728, retro_opri_733,
Pan troglodytes ENSPTRG00000005034 within_species_paralog 1 retrogene
retro_ptro_1905,
Pteropus vampyrus ENSPVAG00000006297 ortholog_one2one 2 retrogenes
retro_pvam_294, retro_pvam_786,
Rattus norvegicus ENSRNOG00000011814 possible_ortholog 2 retrogenes
retro_rnor_120, retro_rnor_301,
Sarcophilus harrisii ENSSHAG00000017913 ortholog_one2one 1 retrogene
retro_shar_153,
Sus scrofa ENSSSCG00000016711 ortholog_one2one 4 retrogenes
retro_sscr_1031, retro_sscr_204, retro_sscr_420, retro_sscr_755,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ptro_17 72.88 93.44
Please wait, loading
Please wait, loading
Please wait, loading
2. retro_ptro_395 99.04 56.83
Please wait, loading
Please wait, loading
Please wait, loading
3. retro_ptro_537 89.73 100.00
Please wait, loading
Please wait, loading
Please wait, loading
4. retro_ptro_630 72.84 87.43
Please wait, loading
Please wait, loading
Please wait, loading
5. retro_ptro_729 79.59 53.55
Please wait, loading
Please wait, loading
Please wait, loading
6. retro_ptro_780 86.52 96.72
Please wait, loading
Please wait, loading
Please wait, loading
7. retro_ptro_1706 72.22 78.69
Please wait, loading
Please wait, loading
Please wait, loading
8. retro_ptro_1875 71.57 55.19
Please wait, loading
Please wait, loading
Please wait, loading
9. retro_ptro_2289 82.35 92.90
Please wait, loading
Please wait, loading
Please wait, loading
10. retro_ptro_2475 81.52 100.00
Please wait, loading
Please wait, loading
Please wait, loading
Download FASTA sequences of all ENSPTRG00000019003 retrocopies