Parental gene: | CBX3, ENSPTRG00000019003 |
| Aliases: | None |
| Description: | None |
| Organism: | Chimpanzee (Pan troglodytes) |
| Coordinates: | 7:24793765..24805597(+) |
>ENSPTRG00000019003
ATGGCCTCCAATAAAACTACATTGCAAAAAATGGGAAAAAAACAGAATGGAAAGAGTAAAAAAGTTGAAGAGGCAGAGCC
TGAAGAATTTGTCGTGGAAAAAGTACTAGATCGACGTGTAGTGAATGGGAAAGTGGAATATTTCCTGAAGTGGAAGGGAT
TTACAGATGCTGACAATACTTGGGAACCTGAAGAAAATTTAGATTGTCCAGAATTGATTGAAGCGTTTCTTAACTCTCAG
AAAGCTGGCAAAGAAAAAGATGGTACAAAAAGAAAATCTTTATCTGACAGTGAATCTGATGACAGCAAATCAAAGAAGAA
AAGAGATGCTGCTGACAAACCAAGAGGATTTGCCAGAGGTCTTGATCCTGAAAGAATAATTGGTGCCACAGACAGCAGTG
GAGAATTGATGTTTCTCATGAAATGGAAAGATTCAGATGAGGCAGACTTGGTGCTGGCGAAAGAGGCAAATATGAAGTGT
CCTCAAATTGTAATTGCTTTTTATGAAGAGAGACTAACTTGGCATTCTTGTCCAGAAGATGAAGCTCAATAA
ATGGCCTCCAATAAAACTACATTGCAAAAAATGGGAAAAAAACAGAATGGAAAGAGTAAAAAAGTTGAAGAGGCAGAGCC
TGAAGAATTTGTCGTGGAAAAAGTACTAGATCGACGTGTAGTGAATGGGAAAGTGGAATATTTCCTGAAGTGGAAGGGAT
TTACAGATGCTGACAATACTTGGGAACCTGAAGAAAATTTAGATTGTCCAGAATTGATTGAAGCGTTTCTTAACTCTCAG
AAAGCTGGCAAAGAAAAAGATGGTACAAAAAGAAAATCTTTATCTGACAGTGAATCTGATGACAGCAAATCAAAGAAGAA
AAGAGATGCTGCTGACAAACCAAGAGGATTTGCCAGAGGTCTTGATCCTGAAAGAATAATTGGTGCCACAGACAGCAGTG
GAGAATTGATGTTTCTCATGAAATGGAAAGATTCAGATGAGGCAGACTTGGTGCTGGCGAAAGAGGCAAATATGAAGTGT
CCTCAAATTGTAATTGCTTTTTATGAAGAGAGACTAACTTGGCATTCTTGTCCAGAAGATGAAGCTCAATAA
| Library | Parental gene expression (RPM) |
|---|---|
| SRP007412_brain_prefrontal_cortex | 30 .19 RPM |
| SRP007412_cerebellum | 17 .71 RPM |
| SRP007412_heart | 22 .38 RPM |
| SRP007412_kidney | 31 .98 RPM |
| SRP007412_liver | 21 .93 RPM |
| SRP007412_testis | 73 .66 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000002897 | possible_ortholog | 11 retrogenes | |
| Callithrix jacchus | ENSCJAG00000007952 | possible_ortholog | 8 retrogenes | |
| Loxodonta africana | ENSLAFG00000006907 | possible_ortholog | 3 retrogenes | |
| Mus musculus | ENSMUSG00000029836 | possible_ortholog | 1 retrogene | |
| Otolemur garnettii | ENSOGAG00000016583 | possible_ortholog | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000011713 | ortholog_one2one | 9 retrogenes | |
| Pan troglodytes | ENSPTRG00000005034 | within_species_paralog | 1 retrogene | |
| Pteropus vampyrus | ENSPVAG00000006297 | ortholog_one2one | 2 retrogenes | |
| Rattus norvegicus | ENSRNOG00000011814 | possible_ortholog | 2 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000017913 | ortholog_one2one | 1 retrogene | |
| Sus scrofa | ENSSSCG00000016711 | ortholog_one2one | 4 retrogenes |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_ptro_17 | 72.88 | 93.44 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_ptro_395 | 99.04 | 56.83 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_ptro_537 | 89.73 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_ptro_630 | 72.84 | 87.43 | Please wait, loading | Please wait, loading | Please wait, loading |
| 5. | retro_ptro_729 | 79.59 | 53.55 | Please wait, loading | Please wait, loading | Please wait, loading |
| 6. | retro_ptro_780 | 86.52 | 96.72 | Please wait, loading | Please wait, loading | Please wait, loading |
| 7. | retro_ptro_1706 | 72.22 | 78.69 | Please wait, loading | Please wait, loading | Please wait, loading |
| 8. | retro_ptro_1875 | 71.57 | 55.19 | Please wait, loading | Please wait, loading | Please wait, loading |
| 9. | retro_ptro_2289 | 82.35 | 92.90 | Please wait, loading | Please wait, loading | Please wait, loading |
| 10. | retro_ptro_2475 | 81.52 | 100.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSPTRG00000019003 retrocopies