Parental gene:

CBX3, ENSPVAG00000006297

Aliases:None
Description:chromobox homolog 3 [Source:HGNC Symbol;Acc:1553]
Organism:Megabat (Pteropus vampyrus)
Coordinates:GeneScaffold_195:114562..120222(+)


>ENSPVAG00000006297
CAAAAAATGGGAAAGAAGCAAAATGGAAAAAGTAAAAAAGTCGAAGAGGCAGAGCCTGAAGAATTTGTGGTGGAAAAAGT
ACTGGACCGACGCGTCGTGAATGGGAAGGTGGAATATTTCCTGAAGTGGAAGGGGTTCACAGATGCTGACAATACTTGGG
AACCTGAAGAAAATTTAGATTGTCCAGAGTTAATTGAAGCATTTCTAAATTCTCAAAAAGCTGGTAAAGAAAAAGATGGT
ACAAAAAGAAAATCTTTATCCGACAGTGAGTCTGATGATAGCAAATCAAAGAAGAAAAGAGATGCTGCTGACAAACCAAG
AGGCTTTGCCAGAGGTCTTGATCCTGAACGAATAATTGGTGCCACAGACAGCAGTGGAGAATTAATGTTCCTCATGAAGT
GGAAAGATTCAGATGAGGCAGATTTGGTGCTGGCAAAAGAGGCAAATATGAAGTGTCCTCAAATTGTAATTGCTTTTTAT
GAAGAGAGACTAACTTGGCATTCTTGTCCGGAAGACGAAGCCCAATAA

Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000002897 possible_ortholog 11 retrogenes
retro_cfam_1157, retro_cfam_161, retro_cfam_1811, retro_cfam_1823, retro_cfam_1849, retro_cfam_2083, retro_cfam_502, retro_cfam_594, retro_cfam_739, retro_cfam_931, retro_cfam_948,
Callithrix jacchus ENSCJAG00000007952 possible_ortholog 8 retrogenes
retro_cjac_1100, retro_cjac_1414, retro_cjac_1612, retro_cjac_2405, retro_cjac_2623, retro_cjac_2728, retro_cjac_3322, retro_cjac_869,
Loxodonta africana ENSLAFG00000006907 possible_ortholog 3 retrogenes
retro_lafr_661, retro_lafr_687, retro_lafr_776,
Mus musculus ENSMUSG00000029836 possible_ortholog 1 retrogene
retro_mmus_77,
Otolemur garnettii ENSOGAG00000016583 possible_ortholog 1 retrogene
retro_ogar_136,
Ochotona princeps ENSOPRG00000011713 ortholog_one2one 9 retrogenes
retro_opri_103, retro_opri_159, retro_opri_209, retro_opri_300, retro_opri_429, retro_opri_569, retro_opri_598, retro_opri_728, retro_opri_733,
Pan troglodytes ENSPTRG00000019003 ortholog_one2one 10 retrogenes
retro_ptro_17, retro_ptro_1706, retro_ptro_1875, retro_ptro_2289, retro_ptro_2475, retro_ptro_395, retro_ptro_537, retro_ptro_630, retro_ptro_729, retro_ptro_780,
Rattus norvegicus ENSRNOG00000011814 possible_ortholog 2 retrogenes
retro_rnor_120, retro_rnor_301,
Sarcophilus harrisii ENSSHAG00000017913 ortholog_one2one 1 retrogene
retro_shar_153,
Sus scrofa ENSSSCG00000016711 ortholog_one2one 4 retrogenes
retro_sscr_1031, retro_sscr_204, retro_sscr_420, retro_sscr_755,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_pvam_294 82.14 96.00
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2. retro_pvam_786 72.92 53.71
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Download FASTA sequences of all ENSPVAG00000006297 retrocopies