RetrogeneDB ID: | retro_ttru_1187 | ||
Retrocopylocation | Organism: | Dolphin (Tursiops truncatus) | |
Coordinates: | scaffold_106703:152831..153368(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | HMGB3 | ||
Ensembl ID: | ENSTTRG00000000205 | ||
Aliases: | None | ||
Description: | high mobility group box 3 [Source:HGNC Symbol;Acc:5004] |
Percent Identity: | 92.74 % |
Parental protein coverage: | 89.05 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGKGDPKKPKGKMSAYAFFVQTCREEHKKKNPEVPVNFAEFSKKCSERWKTMSGKEKSKFDEMAKADKVR |
M.KGDPKKPKGKMSAYAFFV.TCREEHKKKNPEVPVNFAEFSKKCSERWKT.SGKEKSKFDEM.KADKV. | |
Retrocopy | MAKGDPKKPKGKMSAYAFFVKTCREEHKKKNPEVPVNFAEFSKKCSERWKTTSGKEKSKFDEMVKADKVH |
Parental | YDREMKDYGPAKGGKKKKDPNAPKRPPSGFFLFCSEFRPKIKSTNPGISIGDVAKKLGEMWNNLSDSEKQ |
YDREMKDYGPAKGGKKKKDPNAPKRPPSG..LFCSEFRPKIKSTNPGIS.GDVAKKLGEMWNNLSDSEKQ | |
Retrocopy | YDREMKDYGPAKGGKKKKDPNAPKRPPSGLCLFCSEFRPKIKSTNPGISTGDVAKKLGEMWNNLSDSEKQ |
Parental | PYINKAAKLKEKYEKDVADYKSKGKFDGVKGPAKVARKK |
P.INKAAKLKEKYEKD.AD.KSKG.FDG.KGPAKVARKK | |
Retrocopy | PCINKAAKLKEKYEKDAADCKSKGNFDGAKGPAKVARKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |