RetrogeneDB ID: | retro_cpor_929 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_35:22906949..22907490(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EI24 | ||
Ensembl ID: | ENSCPOG00000007272 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 62.96 % |
Parental protein coverage: | 53.04 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 6 |
Parental | IPVLQSVTARIIGDPSLHGDIWSWLEFF-ITSVFSALWVLPLFVLSKIVNAIWFQDIADLAFEVSGRKPQ |
IP.LQS.TA.II.DPSLHGD..S.LEF....S..SA..VL..FVLS..V..IWFQ..A.LAFEV.G..P. | |
Retrocopy | IPALQSITAQIICDPSLHGDV*SQLEFS>LMSILSAFGVLSRFVLSETVRTIWFQEPAELAFEVPGKMPH |
Parental | -PFPSVSKIIADMLFNLLLQALFL-IQGMFVSLFPIHLVGQLVSLL-HMSLLYSLYCFEYRWFNKGIEMH |
.P.P....I.ADMLF..LL..LFL.IQ.M..SLFPI.LVG.LVSLL..MSLLY.LY.F.Y.WF.K.IEMH | |
Retrocopy | <PIPWCQQI-ADMLFG-LLLQLFL>IQRMLLSLFPILLVGPLVSLL<VMSLLYALYFFKYYWFSKRIEMH |
Parental | QRLSNIERNWPYYFGFGLP-LAFLTAMQSSYIISGC-LFSILFPLFIIS |
..LSNIERNW...FG.GLP.LAF.TAM..SYIIS...LFS.LF.LF.I. | |
Retrocopy | **LSNIERNWLCHFGCGLP<LAFPTAMPYSYIISAT<LFSYLFLLFHIN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 41 .41 RPM |
SRP017611_kidney | 0 .00 RPM | 46 .38 RPM |
SRP017611_liver | 0 .00 RPM | 47 .57 RPM |
SRP040447_lung | 0 .00 RPM | 37 .28 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 43 .34 RPM |