RetrogeneDB ID: | retro_pcap_452 | ||
Retrocopylocation | Organism: | Hyrax (Procavia capensis) | |
Coordinates: | scaffold_94965:5328..6035(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EI24 | ||
Ensembl ID: | ENSPCAG00000012762 | ||
Aliases: | None | ||
Description: | etoposide induced 2.4 [Source:HGNC Symbol;Acc:13276] |
Percent Identity: | 63.11 % |
Parental protein coverage: | 67.51 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 4 |
Parental | SSVLAQRRAQSIERKQESEPRIVSRILQCCAWNGGVFWLSLLLFYRVFIPGLQSVTAQIIGDPSLHGDVW |
SSV..QR.AQ.I...QE.E..IV.RI.QCCA.NGGV..L.LL......IP.L.S...QI.GD.SLHGDV. | |
Retrocopy | SSVRTQRKAQHIQSSQENESCIVARIFQCCA*NGGVICLTLLSHH---IPVLLSGSSQITGDLSLHGDVL |
Parental | SWLEFFLTSI-FSALWVLP-LFVLSKVVNAIWFQDIADLAFEVSGRKPHPFPSVSKIIADMLFNLLLQAL |
..L.F.LTSI..SALWVL..L..LSKVVNAIWFQD...LA.EV.GRKPHPFP.V.K.IAD.LFNLLLQAL | |
Retrocopy | LRLKFSLTSI<YSALWVLS<LLMLSKVVNAIWFQDTGVLALEVLGRKPHPFPGVRKTIADTLFNLLLQAL |
Parental | -SFQGMFVSLFPIHLVGQLVSLLHMSL-LYSLYCFEYRWFNKGIEMHQRLSNIERNWPYYFGFGLPLA-F |
...QGMFV..F.I.L.G...SLL.MSL.L.SLYC.EY.WFN.G.E.H..LSN.ER....YF.F.LPL... | |
Retrocopy | FLLQGMFVNVFSICLFGKPMSLLTMSL<L*SLYCSEYHWFNHGNEIHWQLSNTERDCRSYFRFDLPLT<L |
Parental | LTAMQSSYVISGCLFSILFPLFIISANEAKTPGK |
LT.MQSSY..SGCLFSI.FPLFIIS....K..GK | |
Retrocopy | LTVMQSSYIFSGCLFSIVFPLFIISIS*TKATGK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |