RetrogeneDB ID: | retro_lafr_264 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_108:366948..367627(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EI24 | ||
Ensembl ID: | ENSLAFG00000010888 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.92 % |
Parental protein coverage: | 63.94 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 4 |
Parental | LFYRVFIPGLQSVTAQIIGDPSLHGDVWSWLEFFLTSIFSALWVL-PLFVLSKVVNAIWFQDIADLAFEV |
LFY.VFIP.LQS.TAQIIGD..LHGDV..WLEFF.TSIFSALWVL.PLFVLS.V..AIWFQD.ADLAFEV | |
Retrocopy | LFYQVFIPVLQSGTAQIIGDTLLHGDVCPWLEFFHTSIFSALWVL<PLFVLSRVFSAIWFQDTADLAFEV |
Parental | SGRKPHPFPSVSKIIADMLFNLLLQALFLLQGMFVSLF-PIHLVGQLVSLLHMSLLYSLYCFEYRWFNKG |
SGRKPHPFPSVSKIIADM.FNLLLQALFLLQGMF.SLF.PIHLVGQ.VSLLH.SLLYSLYCF.Y..F.KG | |
Retrocopy | SGRKPHPFPSVSKIIADMVFNLLLQALFLLQGMFESLF<PIHLVGQRVSLLHVSLLYSLYCFGYH*FGKG |
Parental | IEMHQRLSNIERNWPYY-FGFGLPLAFLTAMQSSYIISGCLFSILFPLFIISANEAKTPGKAYL-FQLRL |
IEMH..LS..ER...YY..GF.LPLA.LTAM.SS.II..CLFSI.F.LFI.S..EA..P.K.YL.FQLRL | |
Retrocopy | IEMH*WLSSVERYCSYY<LGFRLPLAVLTAMWSS*IINSCLFSIHFLLFITST*EA*APDKGYL>FQLRL |
Parental | FSLVVFLSNRLFHKTVYLQSA |
FSL.VFL.NR.FHKTV.LQSA | |
Retrocopy | FSLGVFLNNRPFHKTVHLQSA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |