RetrogeneDB ID: | retro_mmul_2244 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 7:97375885..97376961(-) | ||
Located in intron of: | ENSMMUG00000006360 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EI24 | ||
Ensembl ID: | ENSMMUG00000010009 | ||
Aliases: | None | ||
Description: | etoposide induced 2.4 mRNA [Source:RefSeq peptide;Acc:NP_001244437] |
Percent Identity: | 90.83 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | IWGHFSLLCVADSLVVKMADSV-KTFLQDL-ARGIKDSIWGICTISKLDARIQQKREEQRRRRASSILAQ |
IWGHFSLLCV.DSLVVK....V.K.F...L.ARGIKDSIWGICTISKLDARIQQKREEQ.RRRASS.LAQ | |
Retrocopy | IWGHFSLLCVVDSLVVKRWLTVSKPFSRTL<ARGIKDSIWGICTISKLDARIQQKREEQPRRRASSVLAQ |
Parental | RRAQSIERKQESEPRIVSRIFQCCAWNGGVFWFSLLLFYRVFIPVLQSVTARIIGDPSLHGDVWSWLEFF |
RRAQSIE.KQ.SEPRIVSRIFQCCAWNGGVFWFSLLLFYRVFIPVLQSVTARII.DPSLHGDVWSWLEFF | |
Retrocopy | RRAQSIEQKQQSEPRIVSRIFQCCAWNGGVFWFSLLLFYRVFIPVLQSVTARIIDDPSLHGDVWSWLEFF |
Parental | LTSVFSALWVLPLFVLSKVVNAIWFQDIADLAFEVSGRKPHPFPSVSKIIADMLFNLLLQALFLIQGMFV |
LTS.FSAL.VLPLFVLSKV.NAIWFQDIADLAFEVSGRKPHPFPSVSKIIAD.LF.LLLQALFLIQGMFV | |
Retrocopy | LTSIFSALSVLPLFVLSKVANAIWFQDIADLAFEVSGRKPHPFPSVSKIIADVLFSLLLQALFLIQGMFV |
Parental | SLFPIHLVGQLV-SLLHMSLLYSLYCFEYRWFNKGIEMHQRLSNIERNWPYYFGFGLPLAFLTAMQSSYI |
SLFPIHLV.QLV.SLLHMSLLYSLYC.EYRWFNKG.EMHQRL.NIERNW.YYFGFGLPLAFLTA.QSSYI | |
Retrocopy | SLFPIHLVSQLVSSLLHMSLLYSLYCLEYRWFNKGTEMHQRLPNIERNWLYYFGFGLPLAFLTAVQSSYI |
Parental | ISGCLFSILFPLFIISANEAKTPGKAYLFQLRLFSLVVFLSNRLFHKTVYLQSALSSSTSAEKFPSPHPS |
ISGCLFSILFPL.IISANEAKTPGKAYLFQLRLFSLVVFLSNRLFHKTV.LQSA.SSSTSAEKFPSPH.S | |
Retrocopy | ISGCLFSILFPLLIISANEAKTPGKAYLFQLRLFSLVVFLSNRLFHKTVCLQSAPSSSTSAEKFPSPHLS |
Parental | PAKLKAAAGH |
PAKLKAA.GH | |
Retrocopy | PAKLKAAVGH |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 49 .19 RPM |
SRP007412_brain_prefrontal_cortex | 0 .24 RPM | 62 .27 RPM |
SRP007412_cerebellum | 0 .19 RPM | 38 .94 RPM |
SRP007412_heart | 0 .18 RPM | 27 .50 RPM |
SRP007412_kidney | 0 .47 RPM | 43 .43 RPM |
SRP007412_liver | 0 .00 RPM | 76 .91 RPM |
SRP007412_testis | 0 .15 RPM | 42 .52 RPM |