RetrogeneDB ID: | retro_mmul_1443 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 2:92024716..92025782(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EI24 | ||
Ensembl ID: | ENSMMUG00000010009 | ||
Aliases: | None | ||
Description: | etoposide induced 2.4 mRNA [Source:RefSeq peptide;Acc:NP_001244437] |
Percent Identity: | 73.96 % |
Parental protein coverage: | 99.72 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 4 |
Parental | IWGHFSLLCVADSLVVK-MADSVKTFLQDLARGIKDSIWGICTISKLDARIQQKREEQRRRRASSILAQR |
IWGHF.LLC..DSL....MADSV.TFL.DL.RG.KDSIWGICTIS........KREEQR.RRASS.LAQR | |
Retrocopy | IWGHFYLLCTVDSLGSEDMADSVETFLHDLPRGVKDSIWGICTISS*MLQ-SSKREEQRGRRASSVLAQR |
Parental | RAQSIERKQESEPRIV-SRIFQCCAWNGGVFWFSLLLFYRVFIPVLQSVTARIIGDPSLHGDVWSWLEFF |
..Q.IE..QE.EP..V..RIF.CC.W..GV.WFSLLL.YRVFIP.LQ.VT..I..DPSL.GD.WSWLEFF | |
Retrocopy | IPQNIEWEQENEPASV<GRIFRCCIWDDGVLWFSLLLLYRVFIPGLQ*VTE*ITYDPSLCGDAWSWLEFF |
Parental | LTSVFSALWVLPLFVLSKVVNAIWFQDIADLAFEVSGRKPHPFPSVSKIIADMLFNLLLQALFLIQGMFV |
L.....A.WVLPLF..SKVVNAI.FQD.ADLAFE.SGRKPHPFPSV.KI.ADML..LLLQAL...QGM.V | |
Retrocopy | LI*ISRAFWVLPLFMPSKVVNAI*FQDTADLAFEASGRKPHPFPSVHKITADMLSTLLLQALSPVQGMSV |
Parental | SLFPIHLVGQLVSLLHMSLLYSLYCFEYRWFNKGIEMHQRLSNIERNWPYYFGFGLPLA-FLTAMQSSYI |
SLF..HLVGQLV.L...SLL.SLYCF.Y.WFNKGIEM.Q.LSN.ERN..YYFGFGLPLA.FLTAMQ.SYI | |
Retrocopy | SLFSTHLVGQLVTLWRFSLLDSLYCFKYGWFNKGIEMYQQLSNLERNLLYYFGFGLPLA<FLTAMQPSYI |
Parental | ISGCLFSILFPLFIISA-NEAKTPGKAYLFQLRLFSLVVFLSNRLFHKTV-YLQSALSSSTSAEKFPSPH |
I.GCLFSILFPLFIISA.N.AK.P.K.YLF.L.L.SLVVFLSNRLFHKTV..LQSALSSSTSAEKFPSPH | |
Retrocopy | IHGCLFSILFPLFIISA<NKAKIPSKTYLFELHLSSLVVFLSNRLFHKTV>HLQSALSSSTSAEKFPSPH |
Parental | PSPAKLKAAAG |
.SP.KLKA.AG | |
Retrocopy | ISPPKLKATAG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 49 .19 RPM |
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 62 .27 RPM |
SRP007412_cerebellum | 0 .00 RPM | 38 .94 RPM |
SRP007412_heart | 0 .00 RPM | 27 .50 RPM |
SRP007412_kidney | 0 .00 RPM | 43 .43 RPM |
SRP007412_liver | 0 .00 RPM | 76 .91 RPM |
SRP007412_testis | 0 .23 RPM | 42 .52 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2782 |
Pan troglodytes | retro_ptro_1883 |
Pongo abelii | retro_pabe_2234 |