RetrogeneDB ID: | retro_lafr_399 | ||
Retrocopylocation | Organism: | Elephant (Loxodonta africana) | |
Coordinates: | scaffold_143:456010..456740(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EI24 | ||
Ensembl ID: | ENSLAFG00000010888 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 75.1 % |
Parental protein coverage: | 68.45 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 4 |
Parental | VVDRWGGEEMADSVKTFLQDLARGIKDSIWGICTISKLDARIQQKREEQRRRR-ASSVLAQRRAQSIERK |
VVD..GGEEMA..VKTFLQ..ARGIKDSIWGI.TISKL.A.I..KREE..RRR.ASS.L.Q...QS.E.K | |
Retrocopy | VVDGLGGEEMAGGVKTFLQGHARGIKDSIWGIYTISKLGAPIL*KREEKHRRR<ASSDLTQKGPQSTEPK |
Parental | QE-SEPRIVSRIFQCCAWNGGVFWLSLLLFYRVFIPGLQSVTAQIIGDPSL--HGDVWSWLEFFLTSIFS |
Q..SEPRI..RIFQCCAWNGG.F.LSLLLF..VFIP..QSVTAQIIGD......GDV.SWLEFFLTSIFS | |
Retrocopy | QD>SEPRIAGRIFQCCAWNGGIFCLSLLLFHQVFIPVIQSVTAQIIGDLFFYHYGDV*SWLEFFLTSIFS |
Parental | ALWV-LPLFVLSKVVNAIWFQDIADLAFEVSGRKPHPFPSVSKIIADMLFNLLL-QALFLLQGMFVSLFP |
ALWV..PLFVLSKVVN.IWFQ.IAD..FEVSGRKPHPFPS..K..ADMLFNL.L.QALFLLQG.F.SLF. | |
Retrocopy | ALWV<APLFVLSKVVNVIWFQNIADQTFEVSGRKPHPFPSIRKATADMLFNLCL<QALFLLQGKFGSLF- |
Parental | IHLVGQLVSLLHMSLLYSLYCFEYRWFNKGIEMHQRLSN |
IH.VGQLV.LLHMS.LYSL.CFE...FNKGIEMH..LSN | |
Retrocopy | IHPVGQLVCLLHMSILYSLHCFE*Y*FNKGIEMH*LLSN |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |