RetrogeneDB ID: | retro_pabe_3107 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 7:142383725..142384542(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EI24 | ||
Ensembl ID: | ENSPPYG00000004033 | ||
Aliases: | None | ||
Description: | etoposide induced 2.4 [Source:HGNC Symbol;Acc:13276] |
Percent Identity: | 69.53 % |
Parental protein coverage: | 80.59 % |
Number of stop codons detected: | 6 |
Number of frameshifts detected | 5 |
Parental | MADSVKTFLQDLARGIKDSIWG-ICTISKLDARIQQKREEQRRRRASSVLAQRRAQ-SIERKQESEPRIV |
M.DS.KTFLQDL.RGIKDSIWG.I.T.SKL...IQQK.E.....R..S.....R.Q..IE...ES.P.IV | |
Retrocopy | MPDSFKTFLQDLGRGIKDSIWG>IFTVSKLHV*IQQKGE-EQH*RKASSVLAQRSQ>NIE*E*ESGPCIV |
Parental | SRIFQCCAWNGGVFWFSLL-LFYRVFIPVLQSVTARIIGDPSLHGDVWSWLEFFLTSVFSALWVLPLFVL |
SRIFQCC.WNGGVFW.SL..LFY.VFI..L.SV...IIGD.S.HGD..SWL.FFL.S..SA..VLPLFV. | |
Retrocopy | SRIFQCCTWNGGVFWSSLP<LFY*VFILLLWSVIP*IIGDLSRHGDAQSWLDFFLMSISSAHCVLPLFVP |
Parental | SKVVNAIWFQDIADLAFEVSGRKPHPFPSVSKIIADMLFNLLLQALFLIQGMFVSLFPIHLVGQLVSLLH |
SKVVNAIWFQDIADLAFE...RKPHPFP.V.KIIADML.NLLLQALFL.QG.FVSLFPIHLV.QLVSLLH | |
Retrocopy | SKVVNAIWFQDIADLAFEKPVRKPHPFPGVCKIIADMLSNLLLQALFLNQGVFVSLFPIHLV-QLVSLLH |
Parental | MSLLYSLYCFEYRWFNKGI-EMHQRLSNIERNWPYYFGFGLPLAFLTAMQSS-YIISGCLFSILFPLFI |
MSLLYSL.CF.Y.WFNK...E..Q.LSNIERNW.YYFGFGLPLAFL.AMQSS.Y..S......LF.... | |
Retrocopy | MSLLYSLCCFKYCWFNKEM<EVYQQLSNIERNWSYYFGFGLPLAFLMAMQSS>YQCSHIISGCLFSILV |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 55 .12 RPM |
SRP007412_cerebellum | 0 .00 RPM | 51 .44 RPM |
SRP007412_heart | 0 .00 RPM | 32 .84 RPM |
SRP007412_kidney | 0 .00 RPM | 54 .39 RPM |
SRP007412_liver | 0 .00 RPM | 76 .35 RPM |