RetrogeneDB ID: | retro_pabe_2234 | ||
Retrocopylocation | Organism: | Orangutan (Pongo abelii) | |
Coordinates: | 3:102076621..102077635(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EI24 | ||
Ensembl ID: | ENSPPYG00000004033 | ||
Aliases: | None | ||
Description: | etoposide induced 2.4 [Source:HGNC Symbol;Acc:13276] |
Percent Identity: | 77.1 % |
Parental protein coverage: | 99.71 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 6 |
Parental | MADSVKTFLQDLARGIKDSIWGICTIS-KLDARIQQKR-EEQRRRRASSVLAQRRAQSIERKQESEPRIV |
MADSVKTFLQDL.RG.KDSIW.ICTIS..LDA.I.QKR.E...R.RAS.VLAQR..QSIE..Q.SEP..V | |
Retrocopy | MADSVKTFLQDLPRGVKDSIWDICTIS<QLDAPIHQKR>EQRGR-RASIVLAQRILQSIEWEQASEPASV |
Parental | SRIFQCCAWNGGVFWFSLLLF-YRVFIPVLQSVTARIIGDPSLHGDVWSWLEFFLTSVFSALWVLPLFVL |
.RIFQCC.W.GGV.WFSLLL..YRVFIP.LQ.VTA.I..DPSL.GD.WSWL.FFL.....A.W.LPLF.. | |
Retrocopy | GRIFQCCTWSGGVLWFSLLLL<YRVFIPGLQ*VTA*ITYDPSLCGDAWSWLQFFLV*ISRAFWMLPLFMP |
Parental | SKVVNAIWFQDIADLAFEVSGRKPHPFPSVSKIIADMLFNLLLQALFLIQGMFVSLFPIHLVGQLVSLLH |
SKVVN.IWFQD.ADLAFE.SGRKPHPFPSV.KI.ADML.NLLLQALF.IQG..VSLFP.HLVGQLV.L.. | |
Retrocopy | SKVVNVIWFQDTADLAFEASGRKPHPFPSVHKITADMLSNLLLQALFPIQGRSVSLFPTHLVGQLVTLWC |
Parental | MSLLYSLYCFEYRWFNKGIEMHQRL-SNIERNWPYYFGFGLPLAFLTAMQSSYIISGCLFSILFPLFIIS |
.SLL.S.YCF.Y.WFNKGIEMHQR..SNIERNW.YYFGFGLPLAFLTAMQSSYI..GCLFSILFPLFIIS | |
Retrocopy | LSLLDSFYCFKYGWFNKGIEMHQRF>SNIERNWLYYFGFGLPLAFLTAMQSSYIFHGCLFSILFPLFIIS |
Parental | A-NEAKTPGKAYLFQLRLFSLVVFLSNRLFHKTV-YLQSALSSSTSAEKFPSPHPSPAKLKAAAG |
A.NEAK.PG.AYLF.L.L.S.VVFLSNRLFHKT...LQSALSSSTSAEKFPSPH.SP.KLKA.AG | |
Retrocopy | A<NEAKIPGQAYLFELHLSSFVVFLSNRLFHKTL>HLQSALSSSTSAEKFPSPHVSPPKLKATAG |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 55 .12 RPM |
SRP007412_cerebellum | 0 .00 RPM | 51 .44 RPM |
SRP007412_heart | 0 .00 RPM | 32 .84 RPM |
SRP007412_kidney | 0 .00 RPM | 54 .39 RPM |
SRP007412_liver | 0 .00 RPM | 76 .35 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_2782 |
Pan troglodytes | retro_ptro_1883 |
Macaca mulatta | retro_mmul_1443 |