RetrogeneDB ID: | retro_opri_106 | ||
Retrocopylocation | Organism: | Southern American pika (Ochotona princeps) | |
Coordinates: | GeneScaffold_234:25907..26735(-) | ||
Located in intron of: | ENSOPRG00000006627 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EI24 | ||
Ensembl ID: | ENSOPRG00000013491 | ||
Aliases: | None | ||
Description: | etoposide induced 2.4 [Source:HGNC Symbol;Acc:13276] |
Percent Identity: | 82.04 % |
Parental protein coverage: | 77.87 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | IWGHSSLLCVVDS-GGEEMADSVKTFLQDLARGIKDSIWGICTISKLDARIQQKREEQ-RRRRASSVLAQ |
IWGHSSLLCVVDS.GGEEM.DS.KTFLQDLARGIKD.IWGICTISKLDARIQQKREE..R.......... | |
Retrocopy | IWGHSSLLCVVDSLGGEEMTDSLKTFLQDLARGIKDFIWGICTISKLDARIQQKREEP<RSKKGKQCPGT |
Parental | RRAQSVERKQESEPRIVSRIFQCCAWNGGVFWLSLLLFYRVFIPVLQSVTARIIGDPSLHGDVWSWLEFF |
........KQESEPRIVSRIFQCCAWNG.VFW.SLLLFYRVFI.VLQSVTARIIGDPSLHGDVWSWLEFF | |
Retrocopy | ESPECRTGKQESEPRIVSRIFQCCAWNGRVFWFSLLLFYRVFILVLQSVTARIIGDPSLHGDVWSWLEFF |
Parental | LTSIFSALWVLPLFVLSKVVNAIWFQDIADLAFEVSGR-KPHPFPSVSKIIADMLFNLLLQALFLIQGMF |
LT.IFSALW.LPLF.LSKVVN.IWFQ.IADLAF.VSGR..PHPFPSVSKI.ADMLFNLLLQALFLIQGMF | |
Retrocopy | LTLIFSALWLLPLFMLSKVVNVIWFQEIADLAFKVSGR<EPHPFPSVSKIMADMLFNLLLQALFLIQGMF |
Parental | VSLFPIHLVGQLVSLLHMSLLYSLYCFEYRW-FNKGIEMHQRLSNIERNWPYYFGFGLPLA-FLTA-MQS |
VSLFPIHLVGQLVSLLHMSLLYSLYCFEY.W.FNK.I.MHQRLSNIER....Y.G..L.LA.F.TA.MQS | |
Retrocopy | VSLFPIHLVGQLVSLLHMSLLYSLYCFEYHW>FNKAIQMHQRLSNIERT-GFYLGL-LTLA<FITA<MQS |
Parental | SYII |
SYII | |
Retrocopy | SYII |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |