RetrogeneDB ID: | retro_dord_163 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | GeneScaffold_4154:73116..73563(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDORG00000007375 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 86.18 % |
Parental protein coverage: | 51.88 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | VKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVP |
VKCSKEVATAI.GAIILAK.S.VPV..GYWGNKIGKPHTV.CKVTGR..SVLV.LIP.PRGT.IVS.PVP | |
Retrocopy | VKCSKEVATAIPGAIILAKFSNVPVWGGYWGNKIGKPHTVLCKVTGRSASVLVYLIPVPRGTRIVSVPVP |
Parental | KKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRV |
KKLL.MAGIDDC.TSARGCTATL...AKATFDAISKTYSYLTP.LWKETVF.KSPYQEFTDHLVKT.TRV | |
Retrocopy | KKLLLMAGIDDCCTSARGCTATL---AKATFDAISKTYSYLTPNLWKETVFIKSPYQEFTDHLVKTYTRV |
Parental | SVQRTQAPAVAT |
S.QRTQAPAVAT | |
Retrocopy | SMQRTQAPAVAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002549 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000011651 | 11 retrocopies | |
Dipodomys ordii | ENSDORG00000007375 | 18 retrocopies | |
Monodelphis domestica | ENSMODG00000016077 | 1 retrocopy | |
Mus musculus | ENSMUSG00000044533 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000014179 | 12 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000015213 | 5 retrocopies |