RetrogeneDB ID: | retro_dord_500 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_23922:12789..13556(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDORG00000007375 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 82.24 % |
Parental protein coverage: | 87.03 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 3 |
Parental | GRGRGRGRGRAARGGKAEDKEWIPVTKLGRLV-KDMKIKSLEEIYLFSLPIKESEIID-FFLGASLKDEV |
G.GRG.G.G..ARGGKAEDKEWI.VTKL..LV.KDMKIK.L..IYL.SLPI.ESEI...FFLG.SLKDE. | |
Retrocopy | GHGRGQGHGHGARGGKAEDKEWIRVTKLCHLV<KDMKIKFL*KIYLSSLPIHESEIVT<FFLGTSLKDEG |
Parental | LKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGA-IILAKLSIVPVRRGYWGNKIG |
LKIMP..KQTRAGQ.TR.K.FVA.G.YNGHV.L.VKCSKEVATAI....IILAKLSIVPVR.GYWGNKIG | |
Retrocopy | LKIMPMPKQTRAGQCTRLKSFVATGNYNGHVCLSVKCSKEVATAIXXXXIILAKLSIVPVR*GYWGNKIG |
Parental | KPHTVPCKVTGRCGSVLVRLIPAP-RGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAI |
KPHTVP.KVTGRCGSVLVRLIPAP.RGTGIVSA.VPKKLLM.AGI.DCYT.ARGCTATL.NFAKATF.AI | |
Retrocopy | KPHTVPRKVTGRCGSVLVRLIPAP>RGTGIVSASVPKKLLMIAGIYDCYTLARGCTATLDNFAKATFIAI |
Parental | SKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVATT |
SK.YSYLTPDLWKETVFTKSPYQEFT.HLV.THT.VSVQR.QAPAVATT | |
Retrocopy | SKNYSYLTPDLWKETVFTKSPYQEFTAHLVNTHTSVSVQRAQAPAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002549 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000011651 | 11 retrocopies | |
Dipodomys ordii | ENSDORG00000007375 | 18 retrocopies | |
Monodelphis domestica | ENSMODG00000016077 | 1 retrocopy | |
Mus musculus | ENSMUSG00000044533 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000014179 | 12 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000015213 | 5 retrocopies |