RetrogeneDB ID: | retro_rnor_2903 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:27832302..27833176(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps2 | ||
Ensembl ID: | ENSRNOG00000014179 | ||
Aliases: | Rps2, Rps2r1 | ||
Description: | 40S ribosomal protein S2 [Source:UniProtKB/Swiss-Prot;Acc:P27952] |
Percent Identity: | 82. % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 7 |
Parental | MADDAGAAGGPGGPG-GPGLGGRGGFRGGFGSGL-RGRGRGRGRGRGRGRGARGGKAEDK-EWIPVTKLG |
MAD...A.GGPGGP..GPGLGG..GFRGGFGSGL.RG..RGRG.G.GRG.GA.GGK.ED..EW.PVTKLG | |
Retrocopy | MADVTSAVGGPGGPR<GPGLGGHWGFRGGFGSGL>RGPSRGRGCGHGRGHGAHGGKTEDR<EWSPVTKLG |
Parental | RLVKDMKIKSLEEIYLFSLPIKESEIIDF-FLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGH |
.LVKDMKIKSL.EI.LFSLPIKESEII...FLGASLKDEVLK.MPVQKQT.A.Q.T.FKAFV.IGDYNGH | |
Retrocopy | HLVKDMKIKSLKEIHLFSLPIKESEIIGI<FLGASLKDEVLKTMPVQKQTQASQQTMFKAFVTIGDYNGH |
Parental | VGLGVKCSK-EVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAP-RGTGI |
VGLGVKCSK.EVATAIR.AIILAK..I.PVR.GYWGNKIGKPH.VPCKVTG.C.SVLV.LIP.P.RGTGI | |
Retrocopy | VGLGVKCSK<EVATAIRKAIILAKV*IIPVRSGYWGNKIGKPHAVPCKVTGLCVSVLVCLIPSP<RGTGI |
Parental | VSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAI-SKTYSYLTPDLWKETVFTKSPYQEFTDHL |
.SAPVPKKLLMMA..DDCYTSARGCTAT..NFAK.TFDAI.SKT.SYLTPDLWKET.FTKSPYQEFTDH. | |
Retrocopy | FSAPVPKKLLMMACTDDCYTSARGCTAT*DNFAKVTFDAI<SKT*SYLTPDLWKETMFTKSPYQEFTDHP |
Parental | VKTHTRVSVQRTQAPAVATT |
VK.HTRVSVQRTQAPAVATT | |
Retrocopy | VKIHTRVSVQRTQAPAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 122 .44 RPM |
SRP017611_kidney | 0 .00 RPM | 209 .07 RPM |
SRP017611_liver | 0 .00 RPM | 159 .89 RPM |