RetrogeneDB ID: | retro_dord_206 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | GeneScaffold_5454:295696..296337(+) | ||
Located in intron of: | ENSDORG00000015704 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDORG00000007375 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 77.58 % |
Parental protein coverage: | 74.06 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 6 |
Parental | SLEEIYLFSLPIKESEIIDFFLG-ASLKDEVLKIM-PVQKQTRAGQRTRFKAFVAIGD-YNGHVGLGVKC |
SL..IYLFSLPIKESEI.DF..G.ASLKDEVLKIM..V.KQ.RAGQ.TRFKAFVAIG..YNGH.GLGVKC | |
Retrocopy | SL*RIYLFSLPIKESEIVDFLQG<ASLKDEVLKIM>SV*KQPRAGQCTRFKAFVAIGN<YNGHDGLGVKC |
Parental | SKEVATAIRGAIILAKLSIVPVRRGYWG-NKIGKPHTVPCKVTGR-CGSVLVRLIPAPRGTGIVSAPVPK |
SKEVATAI.G.IILAK.SIVPV..GYWG.NK.GKPHTV.CKV.G..C.SVL..LIP.PR.TGI...P.PK | |
Retrocopy | SKEVATAILGSIILAKISIVPVW*GYWG<NKMGKPHTVACKVIGY<CISVLLHLIPIPRATGIMFTPIPK |
Parental | KLLMMA-GIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRV |
K.L.M..G...C.TS..GCTATLGNFAKATFDAIS.TYS.LTPDLWKETVFTKS..Q.FTDHLVKTHTRV | |
Retrocopy | K-LLMM<GWYPCNTSTEGCTATLGNFAKATFDAISRTYSCLTPDLWKETVFTKS-HQKFTDHLVKTHTRV |
Parental | SVQRTQAPAVATT |
SVQRTQAPAVA.T | |
Retrocopy | SVQRTQAPAVAAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002549 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000011651 | 11 retrocopies | |
Dipodomys ordii | ENSDORG00000007375 | 18 retrocopies | |
Monodelphis domestica | ENSMODG00000016077 | 1 retrocopy | |
Mus musculus | ENSMUSG00000044533 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000014179 | 12 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000015213 | 5 retrocopies |