RetrogeneDB ID: | retro_rnor_2257 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 5:146506849..146507593(-) | ||
Located in intron of: | ENSRNOG00000048506 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps2 | ||
Ensembl ID: | ENSRNOG00000014179 | ||
Aliases: | Rps2, Rps2r1 | ||
Description: | 40S ribosomal protein S2 [Source:UniProtKB/Swiss-Prot;Acc:P27952] |
Percent Identity: | 94.44 % |
Parental protein coverage: | 85.32 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | GRGRGRGRGRGRGARGGKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDF-FLGASLKDE |
G.G.GRGRGRGRGARGGKAEDKEWIPVTKLG.LVKDMKIKSLE.IYLFSLPIKESEIIDF.FLGASLKDE | |
Retrocopy | GHG*GRGRGRGRGARGGKAEDKEWIPVTKLGCLVKDMKIKSLE-IYLFSLPIKESEIIDF<FLGASLKDE |
Parental | VLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVK-CSKEVATAIRGAIILAKLSIVPVRRGYWGNKI |
VLKIMPVQKQTRAGQ.TRFKAFVA.GDYNGHVGLGVK.CSKEVATAIRGAIILAKLSIVPV.RGYWGNKI | |
Retrocopy | VLKIMPVQKQTRAGQQTRFKAFVAVGDYNGHVGLGVK>CSKEVATAIRGAIILAKLSIVPVWRGYWGNKI |
Parental | GKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAI |
GKPHTVPCKVTGRCGSVLVRLI..P.GTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAI | |
Retrocopy | GKPHTVPCKVTGRCGSVLVRLISTP-GTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAI |
Parental | SKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQ |
SK.YSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQ.TQ | |
Retrocopy | SKNYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQKTQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .07 RPM | 122 .44 RPM |
SRP017611_kidney | 1 .12 RPM | 209 .07 RPM |
SRP017611_liver | 0 .13 RPM | 159 .89 RPM |