RetrogeneDB ID: | retro_rnor_810 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 11:70665182..70665753(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps2 | ||
Ensembl ID: | ENSRNOG00000014179 | ||
Aliases: | Rps2, Rps2r1 | ||
Description: | 40S ribosomal protein S2 [Source:UniProtKB/Swiss-Prot;Acc:P27952] |
Percent Identity: | 89.18 % |
Parental protein coverage: | 64.85 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | GFGSGLRGRGRGR--GRGRGRGRG-ARGGKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEII |
GF.SG.RGRG.GR..G.GRGRG.G.ARGGKAEDKEWIPVTKLGRLVKDMKIKSLE.IYL.SLPIKESE.I | |
Retrocopy | GFSSGHRGRGHGRRHGLGRGRGHG<ARGGKAEDKEWIPVTKLGRLVKDMKIKSLE-IYLLSLPIKESETI |
Parental | DFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVP |
DFFLG.SLK.EVLKIMPVQKQT.AGQRTRFKAFV.IGDYNGHVGLGVKCSKEV.TAI.GAIILAKL.IVP | |
Retrocopy | DFFLGVSLKNEVLKIMPVQKQTQAGQRTRFKAFVTIGDYNGHVGLGVKCSKEVTTAIHGAIILAKL*IVP |
Parental | VRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPA-PRGTGIVSAPVPKKLLMMA |
VRRGYWGNKIGKPHTVPCKVTGRCGSVLV.LIPA.PR.TGIVSAPVPKKLLMMA | |
Retrocopy | VRRGYWGNKIGKPHTVPCKVTGRCGSVLVCLIPA<PRDTGIVSAPVPKKLLMMA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 122 .44 RPM |
SRP017611_kidney | 0 .00 RPM | 209 .07 RPM |
SRP017611_liver | 0 .00 RPM | 159 .89 RPM |