RetrogeneDB ID: | retro_rnor_1882 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 3:45240572..45241338(-) | ||
Located in intron of: | ENSRNOG00000005335 | ||
Retrocopyinformation | Ensembl ID: | ENSRNOG00000005116 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps2 | ||
Ensembl ID: | ENSRNOG00000014179 | ||
Aliases: | Rps2, Rps2r1 | ||
Description: | 40S ribosomal protein S2 [Source:UniProtKB/Swiss-Prot;Acc:P27952] |
Percent Identity: | 77.99 % |
Parental protein coverage: | 87.37 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | GRGRGRGRGRGRGARG-GKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDE |
G.G.GRG...G.GA.G..K.E....IPVTKLG.LVKDMKIKSLE.IYLFSL.IKESEIIDF..GASLKDE | |
Retrocopy | GHGPGRGHC*GYGAHG<SKSEE***IPVTKLGHLVKDMKIKSLE-IYLFSLLIKESEIIDFLQGASLKDE |
Parental | VLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLS-IVPVRRGYWGNKI |
VLKIMPVQKQT..GQ..RFKAFV.I.D.N.H.GLGV..SK.VATAI.GAIILAK.S..VPV.RGYWGNK. | |
Retrocopy | VLKIMPVQKQTDTGQQIRFKAFVTIEDCNDHIGLGVNFSKKVATAIQGAIILAKFS>LVPVQRGYWGNKR |
Parental | GKP-HTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDA |
GKP.H.VPCKVTG.CG.VLV.LI..PRGTGIVS.PVPK.LLMMAGIDD.YTSARGCT.TLGNFAKA.FD. | |
Retrocopy | GKP>HNVPCKVTGLCGPVLVCLILVPRGTGIVSVPVPKILLMMAGIDDYYTSARGCTVTLGNFAKAHFDG |
Parental | ISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVAT |
I.KTYSYL.PDLWKETVFTKSP.QEFT..LVKTHT.VSVQRTQA.AVAT | |
Retrocopy | IFKTYSYLSPDLWKETVFTKSPCQEFTEYLVKTHTKVSVQRTQAQAVAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 122 .44 RPM |
SRP017611_kidney | 0 .00 RPM | 209 .07 RPM |
SRP017611_liver | 0 .00 RPM | 159 .89 RPM |