RetrogeneDB ID: | retro_dord_499 | ||
Retrocopylocation | Organism: | Kangaroo rat (Dipodomys ordii) | |
Coordinates: | scaffold_23753:12318..13047(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDORG00000007375 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.15 % |
Parental protein coverage: | 83.28 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | AARGGKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASLKDEVLKIMPVQKQTRA |
.A.GGKA.D.E.I..TKL.RL.KDMKIKSLEEIYL.SLPIKESEIIDFFL..SLKD..LKIMPVQKQT.A | |
Retrocopy | SAPGGKAKDEE*ILLTKLSRLGKDMKIKSLEEIYLSSLPIKESEIIDFFLRESLKDDRLKIMPVQKQTQA |
Parental | GQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRG-YWGNKIGKPHTVPCKVTGR |
GQRTRFKAFVA.GD.N.HVGLGV.C.KEVATAIRG.IILAKLSIVP..RG..WGNK.GKPHTVPCKVTGR | |
Retrocopy | GQRTRFKAFVATGDCNSHVGLGVQCAKEVATAIRG-IILAKLSIVPMQRG>NWGNKMGKPHTVPCKVTGR |
Parental | CGSVLVRLIPAPRGTGIV-SAPVPKKLLMMAGIDDCYTSARGCTATLGNFAKATFDAISKTYSYLTPDLW |
CGS.L.RLIPAPRG.GIV.SAPVPKKLL.M.GID.CYTSARGC.ATL.NFAKA.FDAISKTYSYLTPDLW | |
Retrocopy | CGSGLLRLIPAPRGSGIV<SAPVPKKLLLMFGIDECYTSARGCPATLENFAKAAFDAISKTYSYLTPDLW |
Parental | KETVFTKSPYQEFTDHLVKTHTRVSVQRTQAPAVAT |
KETVFTKS.YQ.FT.HLVKTHTRVSVQRTQAPAVAT | |
Retrocopy | KETVFTKSSYQGFTSHLVKTHTRVSVQRTQAPAVAT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Anolis carolinensis | ENSACAG00000002549 | 1 retrocopy | |
Cavia porcellus | ENSCPOG00000011651 | 11 retrocopies | |
Dipodomys ordii | ENSDORG00000007375 | 18 retrocopies | |
Monodelphis domestica | ENSMODG00000016077 | 1 retrocopy | |
Mus musculus | ENSMUSG00000044533 | 1 retrocopy | |
Rattus norvegicus | ENSRNOG00000014179 | 12 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000015213 | 5 retrocopies |