RetrogeneDB ID: | retro_rnor_2191 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 5:170514085..170514773(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps2 | ||
Ensembl ID: | ENSRNOG00000014179 | ||
Aliases: | Rps2, Rps2r1 | ||
Description: | 40S ribosomal protein S2 [Source:UniProtKB/Swiss-Prot;Acc:P27952] |
Percent Identity: | 86.32 % |
Parental protein coverage: | 78.84 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | RGRGRGRGRGRGRGRGARGGKAEDKEWIP-VTKLGRLVKDMKIKSLEEIYLFSLPIKESEIIDFFLGASL |
R.RG.GRG.GRGRGRGA..GKAEDKEWIP..TKLGRL..DMKIKSLEEIYLFSLPIKESEI.DFFLGASL | |
Retrocopy | RHRG*GRGLGRGRGRGACRGKAEDKEWIP<ITKLGRL--DMKIKSLEEIYLFSLPIKESEITDFFLGASL |
Parental | KDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGN |
KDEVLKIMPV.KQT.AG.RTRFKAFV.IGDYNGHVGLGVKCSKEVATAI.GAI.LAKLSIVPVRRGYWGN | |
Retrocopy | KDEVLKIMPVRKQTQAGRRTRFKAFVTIGDYNGHVGLGVKCSKEVATAI*GAITLAKLSIVPVRRGYWGN |
Parental | KIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSAPVPKKLL-MMAGIDDCYTSARGCTATLGNFAKATF |
K.GKPHTVPCKVTGRCGSVLV..IPAPRGTGIVSAPVPKKLL.MMAGID..YTSARGCT.TLGNFAKATF | |
Retrocopy | KTGKPHTVPCKVTGRCGSVLVCPIPAPRGTGIVSAPVPKKLLMMMAGIDNRYTSARGCTVTLGNFAKATF |
Parental | DAISKTYSY-LTPDLWKETVFTKS |
D.IS..YSY.LTPDLWKE.....S | |
Retrocopy | DTISMMYSY<LTPDLWKERLCSPS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 1 .08 RPM | 122 .44 RPM |
SRP017611_kidney | 0 .00 RPM | 209 .07 RPM |
SRP017611_liver | 0 .00 RPM | 159 .89 RPM |