RetrogeneDB ID: | retro_rnor_2274 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 6:8502965..8503516(+) | ||
Located in intron of: | ENSRNOG00000030629 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps2 | ||
Ensembl ID: | ENSRNOG00000014179 | ||
Aliases: | Rps2, Rps2r1 | ||
Description: | 40S ribosomal protein S2 [Source:UniProtKB/Swiss-Prot;Acc:P27952] |
Percent Identity: | 59.79 % |
Parental protein coverage: | 65.53 % |
Number of stop codons detected: | 5 |
Number of frameshifts detected | 2 |
Parental | GPGLGGRGGFRGGFGSGLRGRGRGRGRGRGRGRG-ARGGKAEDKEWIPVTKLGRLVKDMKIKSLEEIYLF |
GPGLGGR...RG..G....G....RG.GRG.G.G..R......K..IPVTKLG.LVKDM...SL..IYLF | |
Retrocopy | GPGLGGR---RGFYG----GFNSSRG-GRGCG*G>MRFVEEKLKS*IPVTKLGHLVKDMR*-SLGDIYLF |
Parental | SLPIKESEIID-FFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHVGLGVKCSKEVATAIRG |
SLPIKE.E.....FLG..LK..VLKIM...K.TR..Q.T.FKAF.AIGDYNGH.GLGVKCSKEV.TA..G | |
Retrocopy | SLPIKEPERLL>LFLGNVLKNGVLKIMLIEKPTRVDQWTKFKAFLAIGDYNGHIGLGVKCSKEVGTAL*G |
Parental | AIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSA |
A.ILAKLSIVPVRRGYWGNKIGKPH.VP.K........L...I..P......S. | |
Retrocopy | ATILAKLSIVPVRRGYWGNKIGKPHSVPWKGRWQAAVALCW*ISSPPQEALASS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 122 .44 RPM |
SRP017611_kidney | 0 .00 RPM | 209 .07 RPM |
SRP017611_liver | 0 .00 RPM | 159 .89 RPM |