RetrogeneDB ID: | retro_rnor_438 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 1:60049142..60050008(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Rps2 | ||
Ensembl ID: | ENSRNOG00000014179 | ||
Aliases: | Rps2, Rps2r1 | ||
Description: | 40S ribosomal protein S2 [Source:UniProtKB/Swiss-Prot;Acc:P27952] |
Percent Identity: | 81.14 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 4 |
Parental | MADDAGAAGGPGGPGGPGLGGRGGFRGGFGSGLRGRGR-GRGRGRGRGRGARGGKAEDKEWIPVTKLGRL |
MADDA.A..G.GGPGGPGL....G.R.GF..G..G.G..G...GRGRGRGARGGKAEDKEWIP.TKL.RL | |
Retrocopy | MADDASAGRGSGGPGGPGL----GSR*GFCGGF-GSGL>GATVGRGRGRGARGGKAEDKEWIPITKLWRL |
Parental | VKDMKIKSLEEIYLFSL-PIKESEII-DFFLGASLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDYNGHV |
VKDMKIKSLEEIYLFSL.P.........FFLG.SLKD.VLKIMPVQKQTRAGQRTRFKAFV.IGDYNGHV | |
Retrocopy | VKDMKIKSLEEIYLFSL>PLRTLRLL>GFFLGVSLKDDVLKIMPVQKQTRAGQRTRFKAFVTIGDYNGHV |
Parental | GLGVKCSKEVATAIRGAIILAKLSIVPVRRGYWGNKIGKPHTVPCKVTGRCGSVLVRLIPAPRGTGIVSA |
GLGVKCSKEVAT.I...IILAKLSI.P.RRG.WGNKIGKPHTVPCKVTG.C.SVLVRL.PAPR.TGIVS. | |
Retrocopy | GLGVKCSKEVATFI*PTIILAKLSIIPMRRGFWGNKIGKPHTVPCKVTGGCESVLVRLVPAPRDTGIVSV |
Parental | PVPKKLLMMAGIDDCYTSARGCTA-TLGNFAKATFDAISKTYSYLTPDLWKETVFTKSPYQEFTDHLVKT |
PVPKKLLMMAGID.CYT.ARGCT...LGNFAK.TFDAISKTYSYLTPDLWKETVFTKSPYQEFT..LVKT | |
Retrocopy | PVPKKLLMMAGIDYCYTTARGCTT<SLGNFAKVTFDAISKTYSYLTPDLWKETVFTKSPYQEFTGRLVKT |
Parental | HTRVSVQRTQAPAVATT |
HT.VSVQRTQAPAVATT | |
Retrocopy | HTSVSVQRTQAPAVATT |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 122 .44 RPM |
SRP017611_kidney | 0 .00 RPM | 209 .07 RPM |
SRP017611_liver | 0 .00 RPM | 159 .89 RPM |