RetrogeneDB ID: | retro_hsap_4790 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | X:17117904..17118440(-) | ||
Located in intron of: | ENSG00000169891 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000214322 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | CBX1 | ||
Ensembl ID: | ENSG00000108468 | ||
Aliases: | CBX1, CBX, HP1-BETA, HP1Hs-beta, HP1Hsbeta, M31, MOD1, p25beta | ||
Description: | chromobox homolog 1 [Source:HGNC Symbol;Acc:1551] |
Percent Identity: | 88.4 % |
Parental protein coverage: | 97.3 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MGKKQNKKKVEEVLEEEEEEYVVEKVLDRRVVKGKVEYLLKWKGFSDEDNTWEPEENLDCPDLIAEFLQS |
M.KKQNKKKVEEVLEEEE.EYVVEKVL.RR.VKGKVEYLLKWKGFSDEDNTWE.EENLDCPDL...F... | |
Retrocopy | MEKKQNKKKVEEVLEEEEQEYVVEKVLYRRLVKGKVEYLLKWKGFSDEDNTWESEENLDCPDLMS-FCRH |
Parental | QK-TAHETDKSEGGKRKADSDSEDKGEESKPKKKKEESEKPRGFARGLEPERIIGATDSSGELMFLMKWK |
.K.TAHE.DKSEGGK.KADSDSEDKGEESKPKKKKEESEKPRGFA.GLEPE.IIGATDSSGELMFLMK.K | |
Retrocopy | RK<TAHEIDKSEGGKHKADSDSEDKGEESKPKKKKEESEKPRGFAQGLEPEQIIGATDSSGELMFLMKGK |
Parental | NSDEADLVPAKEANVKCPQVVISFYEERLTWHSYPSEDDDK |
NSDEADLVPAKE.NVKCP.VVISFYEERLTWHSYP.EDDDK | |
Retrocopy | NSDEADLVPAKEVNVKCPRVVISFYEERLTWHSYPKEDDDK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 30 .25 RPM |
bodymap2_adrenal | 0 .00 RPM | 39 .22 RPM |
bodymap2_brain | 0 .05 RPM | 114 .41 RPM |
bodymap2_breast | 0 .00 RPM | 37 .53 RPM |
bodymap2_colon | 0 .00 RPM | 74 .29 RPM |
bodymap2_heart | 0 .00 RPM | 30 .59 RPM |
bodymap2_kidney | 0 .00 RPM | 48 .23 RPM |
bodymap2_liver | 0 .00 RPM | 10 .52 RPM |
bodymap2_lung | 0 .00 RPM | 41 .63 RPM |
bodymap2_lymph_node | 0 .00 RPM | 48 .35 RPM |
bodymap2_ovary | 0 .00 RPM | 131 .45 RPM |
bodymap2_prostate | 0 .12 RPM | 79 .60 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 41 .43 RPM |
bodymap2_testis | 0 .08 RPM | 161 .06 RPM |
bodymap2_thyroid | 0 .00 RPM | 59 .64 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 64 .67 RPM |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .00 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .00 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .04 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .02 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .00 RPM |
GBR_HG00111 | 0 .02 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .00 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .03 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .00 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .00 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .02 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |