Parental gene:

CBX1, ENSG00000108468

Aliases:CBX1, CBX, HP1-BETA, HP1Hs-beta, HP1Hsbeta, M31, MOD1, p25beta
Description:chromobox homolog 1 [Source:HGNC Symbol;Acc:1551]
Organism:Human (Homo sapiens)
Coordinates:17:46147413..46178883(-)


>ENSG00000108468
ATGGGGAAAAAACAAAACAAGAAGAAAGTGGAGGAGGTGCTAGAAGAGGAGGAAGAGGAATATGTGGTGGAAAAAGTTCT
CGACCGTCGAGTGGTAAAGGGCAAAGTGGAGTACCTCCTAAAGTGGAAGGGATTCTCAGATGAGGACAACACATGGGAGC
CAGAAGAGAACCTGGATTGCCCCGACCTCATTGCTGAGTTTCTGCAGTCACAGAAAACAGCACATGAGACAGATAAATCA
GAGGGAGGCAAGCGCAAAGCTGATTCTGATTCTGAAGATAAGGGAGAGGAGAGCAAACCAAAGAAGAAGAAAGAAGAGTC
AGAAAAGCCACGAGGCTTTGCTCGAGGTTTGGAGCCGGAGCGGATTATTGGAGCTACAGACTCCAGTGGAGAGCTCATGT
TCCTGATGAAATGGAAAAACTCTGATGAGGCTGACCTGGTCCCTGCCAAGGAAGCCAATGTCAAGTGCCCACAGGTTGTC
ATATCCTTCTATGAGGAAAGGCTGACGTGGCATTCCTACCCCTCGGAGGATGATGACAAAAAAGATGACAAGAACTAA

Library Parental gene expression (RPM)
bodymap2_liver 10 .52 RPM
bodymap2_lung 41 .63 RPM
bodymap2_breast 37 .53 RPM
bodymap2_adipose 30 .25 RPM
bodymap2_adrenal 39 .22 RPM
bodymap2_skeletal_muscle 41 .43 RPM
bodymap2_thyroid 59 .64 RPM
bodymap2_prostate 79 .60 RPM
bodymap2_colon 74 .29 RPM
bodymap2_testis 161 .06 RPM
bodymap2_brain 114 .41 RPM
bodymap2_heart 30 .59 RPM
bodymap2_white_blood_cells 64 .67 RPM
bodymap2_lymph_node 48 .35 RPM
bodymap2_ovary 131 .45 RPM
bodymap2_kidney 48 .23 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000004890 ortholog_one2one 2 retrogenes
retro_amel_1228, retro_amel_54,
Canis familiaris ENSCAFG00000016832 ortholog_one2one 1 retrogene
retro_cfam_804,
Choloepus hoffmanni ENSCHOG00000011957 ortholog_one2one 2 retrogenes
retro_chof_1860, retro_chof_2185,
Callithrix jacchus ENSCJAG00000007532 ortholog_one2many 2 retrogenes
retro_cjac_191, retro_cjac_51,
Felis catus ENSFCAG00000006056 ortholog_one2one 1 retrogene
retro_fcat_514,
Homo sapiens ENSG00000094916 within_species_paralog 1 retrogene
retro_hsap_2811,
Homo sapiens ENSG00000122565 within_species_paralog 9 retrogenes
retro_hsap_1071, retro_hsap_1145, retro_hsap_1902, retro_hsap_2332, retro_hsap_2771, retro_hsap_3368, retro_hsap_3650, retro_hsap_766, retro_hsap_910,
Gorilla gorilla ENSGGOG00000024063 ortholog_one2one 3 retrogenes
retro_ggor_2887, retro_ggor_3019, retro_ggor_330,
Microcebus murinus ENSMICG00000009510 ortholog_one2one 4 retrogenes
retro_mmur_1324, retro_mmur_178, retro_mmur_467, retro_mmur_999,
Mustela putorius furo ENSMPUG00000015302 ortholog_one2one 1 retrogene
retro_mputfur_1457,
Nomascus leucogenys ENSNLEG00000002435 ortholog_one2one 4 retrogenes
retro_nleu_1089, retro_nleu_1105, retro_nleu_1955, retro_nleu_2961,
Oryctolagus cuniculus ENSOCUG00000008021 possible_ortholog 3 retrogenes
retro_ocun_177, retro_ocun_442, retro_ocun_55,
Procavia capensis ENSPCAG00000002381 ortholog_one2one 2 retrogenes
retro_pcap_134, retro_pcap_308,
Pongo abelii ENSPPYG00000008891 ortholog_one2many 1 retrogene
retro_pabe_78,
Sarcophilus harrisii ENSSHAG00000008192 ortholog_one2one 1 retrogene
retro_shar_76,
Sus scrofa ENSSSCG00000017529 ortholog_one2one 1 retrogene
retro_sscr_635,
Tupaia belangeri ENSTBEG00000014931 ortholog_one2one 39 retrogenes
retro_tbel_1388, retro_tbel_1557, retro_tbel_1613, retro_tbel_1655, retro_tbel_1663, retro_tbel_1794, retro_tbel_2124, retro_tbel_2130, retro_tbel_2281, retro_tbel_2313, retro_tbel_2346, retro_tbel_2539, retro_tbel_2559, retro_tbel_2571, retro_tbel_2587, retro_tbel_270, retro_tbel_2713, retro_tbel_2716, retro_tbel_2752, retro_tbel_2809, retro_tbel_2835, retro_tbel_2854, retro_tbel_2926, retro_tbel_2993, retro_tbel_303, retro_tbel_3236, retro_tbel_3370, retro_tbel_3685, retro_tbel_3998, retro_tbel_4032, retro_tbel_4202, retro_tbel_4611, retro_tbel_4630, retro_tbel_484, retro_tbel_558, retro_tbel_687, retro_tbel_792, retro_tbel_793, retro_tbel_938,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_hsap_4654 74.74 100.00
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2. retro_hsap_4790 88.40 97.30
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3. retro_hsap_4840 93.57 80.46
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Download FASTA sequences of all ENSG00000108468 retrocopies