RetrogeneDB ID: | retro_hsap_3773 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 7:107090534..107090804(+) | ||
Located in intron of: | ENSG00000164597 | ||
Retrocopyinformation | Ensembl ID: | ENSG00000228341 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPL37A | ||
Ensembl ID: | ENSG00000197756 | ||
Aliases: | None | ||
Description: | ribosomal protein L37a [Source:HGNC Symbol;Acc:10348] |
Percent Identity: | 68.48 % |
Parental protein coverage: | 97.83 % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | KRTKKVGIVGKYGTR-YGASLRKMVKKIEISQHAKYTCSFCGKTKMKRRAV-GIWHCGSCMKTVAGGAWT |
K.TK.V.I.GKYG...YGASL.K..KK.EIS..AKYTCSFCG.TKMK..AV.GI.HCGS.MKTVA.GAW. | |
Retrocopy | KLTK*VEITGKYGIA<YGASLWKTLKKTEISHPAKYTCSFCG*TKMKKQAV>GILHCGSYMKTVADGAWI |
Parental | YNTTSAVTVKSAIRRLKELKDQ |
YN.TS....K.AIRRLK.LK.Q | |
Retrocopy | YNATSTNMAKMAIRRLKKLKGQ |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .00 RPM | 446 .28 RPM |
bodymap2_adrenal | 0 .00 RPM | 532 .92 RPM |
bodymap2_brain | 0 .00 RPM | 150 .06 RPM |
bodymap2_breast | 0 .00 RPM | 359 .89 RPM |
bodymap2_colon | 0 .00 RPM | 548 .85 RPM |
bodymap2_heart | 0 .02 RPM | 183 .71 RPM |
bodymap2_kidney | 0 .00 RPM | 239 .25 RPM |
bodymap2_liver | 0 .00 RPM | 207 .77 RPM |
bodymap2_lung | 0 .00 RPM | 468 .39 RPM |
bodymap2_lymph_node | 0 .00 RPM | 598 .08 RPM |
bodymap2_ovary | 0 .04 RPM | 602 .34 RPM |
bodymap2_prostate | 0 .00 RPM | 811 .13 RPM |
bodymap2_skeletal_muscle | 0 .00 RPM | 726 .73 RPM |
bodymap2_testis | 0 .00 RPM | 359 .26 RPM |
bodymap2_thyroid | 0 .00 RPM | 295 .56 RPM |
bodymap2_white_blood_cells | 0 .00 RPM | 620 .54 RPM |
Species | RetrogeneDB ID |
---|---|
Pan troglodytes | retro_ptro_2558 |
Gorilla gorilla | retro_ggor_2538 |
Macaca mulatta | retro_mmul_1639 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .00 RPM |
CEU_NA11843 | 0 .06 RPM |
CEU_NA11930 | 0 .00 RPM |
CEU_NA12004 | 0 .00 RPM |
CEU_NA12400 | 0 .04 RPM |
CEU_NA12751 | 0 .00 RPM |
CEU_NA12760 | 0 .00 RPM |
CEU_NA12827 | 0 .00 RPM |
CEU_NA12872 | 0 .00 RPM |
CEU_NA12873 | 0 .00 RPM |
FIN_HG00183 | 0 .00 RPM |
FIN_HG00277 | 0 .00 RPM |
FIN_HG00315 | 0 .00 RPM |
FIN_HG00321 | 0 .00 RPM |
FIN_HG00328 | 0 .00 RPM |
FIN_HG00338 | 0 .00 RPM |
FIN_HG00349 | 0 .00 RPM |
FIN_HG00375 | 0 .00 RPM |
FIN_HG00377 | 0 .00 RPM |
FIN_HG00378 | 0 .00 RPM |
GBR_HG00099 | 0 .03 RPM |
GBR_HG00111 | 0 .00 RPM |
GBR_HG00114 | 0 .00 RPM |
GBR_HG00119 | 0 .02 RPM |
GBR_HG00131 | 0 .00 RPM |
GBR_HG00133 | 0 .00 RPM |
GBR_HG00134 | 0 .00 RPM |
GBR_HG00137 | 0 .00 RPM |
GBR_HG00142 | 0 .00 RPM |
GBR_HG00143 | 0 .00 RPM |
TSI_NA20512 | 0 .00 RPM |
TSI_NA20513 | 0 .00 RPM |
TSI_NA20518 | 0 .00 RPM |
TSI_NA20532 | 0 .00 RPM |
TSI_NA20538 | 0 .00 RPM |
TSI_NA20756 | 0 .03 RPM |
TSI_NA20765 | 0 .02 RPM |
TSI_NA20771 | 0 .03 RPM |
TSI_NA20786 | 0 .00 RPM |
TSI_NA20798 | 0 .03 RPM |
YRI_NA18870 | 0 .00 RPM |
YRI_NA18907 | 0 .03 RPM |
YRI_NA18916 | 0 .00 RPM |
YRI_NA19093 | 0 .00 RPM |
YRI_NA19099 | 0 .00 RPM |
YRI_NA19114 | 0 .00 RPM |
YRI_NA19118 | 0 .00 RPM |
YRI_NA19213 | 0 .00 RPM |
YRI_NA19214 | 0 .00 RPM |
YRI_NA19223 | 0 .00 RPM |