RetrogeneDB ID: | retro_mmus_629 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 10:27784243..27784643(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Ube2d2a | ||
Ensembl ID: | ENSMUSG00000091896 | ||
Aliases: | Ube2d2a, 1500034D03Rik, Ubc2e, Ube2d2, ubc4 | ||
Description: | ubiquitin-conjugating enzyme E2D 2A [Source:MGI Symbol;Acc:MGI:1930715] |
Percent Identity: | 87.31 % |
Parental protein coverage: | 90.48 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | MALKRIHKELNDLARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYP-FKPPKVAF |
MALKRIHK.LNDLA.D.PAQCSA.PVGD.MF.WQATIMG.N.SPYQGGVFFLTIHFPTDYP.FKPP.V.F | |
Retrocopy | MALKRIHKGLNDLA*DLPAQCSASPVGDNMFYWQATIMGSNGSPYQGGVFFLTIHFPTDYP>FKPPTVTF |
Parental | TTRIYHPNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREK |
TTRIY.PNINSNGSICLD.LRSQWSPALTISKV.LSIC.LLCDPNPD.PLVPEIARIYKTD.EK | |
Retrocopy | TTRIYLPNINSNGSICLDTLRSQWSPALTISKVVLSICPLLCDPNPDGPLVPEIARIYKTDSEK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 38 .27 RPM |
SRP007412_cerebellum | 0 .00 RPM | 22 .06 RPM |
SRP007412_heart | 0 .00 RPM | 16 .09 RPM |
SRP007412_kidney | 0 .00 RPM | 21 .16 RPM |
SRP007412_liver | 0 .00 RPM | 13 .82 RPM |
SRP007412_testis | 0 .00 RPM | 22 .55 RPM |