RetrogeneDB ID: | retro_tsyr_1421 | ||
Retrocopylocation | Organism: | Tarsier (Tarsius syrichta) | |
Coordinates: | scaffold_434589:564..966(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | UBE2D2 | ||
Ensembl ID: | ENSTSYG00000005459 | ||
Aliases: | None | ||
Description: | ubiquitin-conjugating enzyme E2D 2 [Source:HGNC Symbol;Acc:12475] |
Percent Identity: | 64.49 % |
Parental protein coverage: | 50.95 % |
Number of stop codons detected: | 4 |
Number of frameshifts detected | 3 |
Parental | ELNDLARDP-PAQCSAGPVGDDMFH-WQATIMGPN-DSPYQGGVFFLTILFPTD-NFQPPKVAFTTRIYH |
E.NDL..DP.P.Q.SAGPVGDDMFH.WQ...MG...D..YQGGVFFLTI..P.D....PPKV.....IYH | |
Retrocopy | EWNDLPWDP<PVQ*SAGPVGDDMFH<WQDIMMGQK<DRLYQGGVFFLTIHIPKD*PLIPPKVTSPVGIYH |
Parental | PNINSNGSICLDILRSQWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQ |
PN.NSNGSICLD.L.SQW.....ISKVLLSI.SL..D.NPDDPLVP.I..IY.TD.EKYN.I..E.T. | |
Retrocopy | PNVNSNGSICLDLL*SQWLVSSNISKVLLSIYSLFSDANPDDPLVPNIVGIY*TDKEKYNTITQECTR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |