Parental gene:

ENSCJAG00000010529

Aliases:None
Description:None
Organism:Marmoset (Callithrix jacchus)
Coordinates:21:48618110..48625622(-)


>ENSCJAG00000010529
CCTTCCCTAAAGAAACCAAAAGAGGGCGTGAAGACAGAGAACGACCACATCAACCTGAAGGTGGCCGGGCAGGACGGCTC
CGTGGTGCAGTTCAAGATCAAGAGGCACACACCGCTGAGCAAGCTGATGAAGGCCTACTGTGAGAGGCAGGGCTTGTCAA
TGAGACAGATTAGATTCAGGTTTGACGGGCAGCCAATCAATGAGACCGACACTCCAGCACAGCTGGAGATGGAGGACGAG
GACACCATCGATGTGTTCCAGCAGCAGACAGGAGGTGCGCCGGAGAGCAGCCTGGCGGGGCATGGTTTCTAG

Library Parental gene expression (RPM)
SRP051959_colon 4 .24 RPM
SRP051959_heart 4 .47 RPM
SRP051959_kidney 5 .44 RPM
SRP051959_liver 3 .66 RPM
SRP051959_lung 5 .60 RPM
SRP051959_lymph_node 3 .54 RPM
SRP051959_skeletal_muscle 5 .37 RPM
SRP051959_spleen 4 .96 RPM



Species Parental gene accession Homology type Retrogenes number
Ailuropoda melanoleuca ENSAMEG00000002071 ortholog_one2one 3 retrogenes
retro_amel_1388, retro_amel_1586, retro_amel_1863,
Bos taurus ENSBTAG00000017321 possible_ortholog 3 retrogenes
retro_btau_1730, retro_btau_580, retro_btau_701,
Bos taurus ENSBTAG00000030169 possible_ortholog 8 retrogenes
retro_btau_1047, retro_btau_1484, retro_btau_1804, retro_btau_260, retro_btau_344, retro_btau_489, retro_btau_582, retro_btau_895,
Choloepus hoffmanni ENSCHOG00000010239 possible_ortholog 1 retrogene
retro_chof_2468,
Callithrix jacchus ENSCJAG00000004961 within_species_paralog 3 retrogenes
retro_cjac_1686, retro_cjac_1932, retro_cjac_2610,
Cavia porcellus ENSCPOG00000025203 possible_ortholog 3 retrogenes
retro_cpor_328, retro_cpor_645, retro_cpor_963,
Felis catus ENSFCAG00000026550 ortholog_one2one 4 retrogenes
retro_fcat_1210, retro_fcat_1947, retro_fcat_823, retro_fcat_836,
Homo sapiens ENSG00000184900 possible_ortholog 4 retrogenes
retro_hsap_1675, retro_hsap_1841, retro_hsap_3672, retro_hsap_4103,
Microcebus murinus ENSMICG00000011011 ortholog_one2one 2 retrogenes
retro_mmur_179, retro_mmur_41,
Myotis lucifugus ENSMLUG00000025342 possible_ortholog 4 retrogenes
retro_mluc_1502, retro_mluc_272, retro_mluc_340, retro_mluc_625,
Myotis lucifugus ENSMLUG00000028601 ortholog_one2one 2 retrogenes
retro_mluc_1321, retro_mluc_2494,
Macaca mulatta ENSMMUG00000006760 possible_ortholog 3 retrogenes
retro_mmul_2131, retro_mmul_2215, retro_mmul_47,
Mustela putorius furo ENSMPUG00000010234 ortholog_one2one 1 retrogene
retro_mputfur_1504,
Mustela putorius furo ENSMPUG00000013954 possible_ortholog 9 retrogenes
retro_mputfur_1086, retro_mputfur_1403, retro_mputfur_1535, retro_mputfur_273, retro_mputfur_275, retro_mputfur_385, retro_mputfur_666, retro_mputfur_948, retro_mputfur_995,
Mus musculus ENSMUSG00000020265 possible_ortholog 1 retrogene
retro_mmus_3548,
Nomascus leucogenys ENSNLEG00000002351 possible_ortholog 9 retrogenes
retro_nleu_1084, retro_nleu_1253, retro_nleu_1736, retro_nleu_2052, retro_nleu_21, retro_nleu_2128, retro_nleu_3039, retro_nleu_523, retro_nleu_572,
Oryctolagus cuniculus ENSOCUG00000021739 ortholog_one2one 4 retrogenes
retro_ocun_1024, retro_ocun_1631, retro_ocun_1690, retro_ocun_321,
Otolemur garnettii ENSOGAG00000004715 possible_ortholog 10 retrogenes
retro_ogar_1199, retro_ogar_1646, retro_ogar_1945, retro_ogar_2958, retro_ogar_328, retro_ogar_3469, retro_ogar_371, retro_ogar_419, retro_ogar_526, retro_ogar_967,
Rattus norvegicus ENSRNOG00000038489 possible_ortholog 1 retrogene
retro_rnor_2158,
Sus scrofa ENSSSCG00000024026 ortholog_one2one 2 retrogenes
retro_sscr_1089, retro_sscr_320,
Ictidomys tridecemlineatus ENSSTOG00000010587 ortholog_one2one 2 retrogenes
retro_itri_116, retro_itri_1259,
Ictidomys tridecemlineatus ENSSTOG00000024685 possible_ortholog 10 retrogenes
retro_itri_1017, retro_itri_1123, retro_itri_1355, retro_itri_202, retro_itri_264, retro_itri_272, retro_itri_79, retro_itri_921, retro_itri_981, retro_itri_983,
Takifugu rubripes ENSTRUG00000014892 possible_ortholog 1 retrogene
retro_trub_25,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_cjac_711 87.78 86.41
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2. retro_cjac_771 56.76 70.87
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3. retro_cjac_774 64.77 84.47
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4. retro_cjac_1110 83.91 83.50
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5. retro_cjac_1128 63.64 83.50
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6. retro_cjac_1525 63.27 89.32
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7. retro_cjac_1752 85.96 55.34
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8. retro_cjac_1938 89.01 88.35
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9. retro_cjac_1957 66.29 84.47
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10. retro_cjac_1993 93.14 99.03
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11. retro_cjac_2460 81.93 79.61
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12. retro_cjac_2481 76.47 65.05
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13. retro_cjac_2616 78.89 86.41
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14. retro_cjac_2651 78.87 67.96
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15. retro_cjac_2886 78.57 53.40
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16. retro_cjac_2899 70.93 82.52
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17. retro_cjac_2985 62.64 86.41
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18. retro_cjac_3088 89.29 54.37
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19. retro_cjac_3137 77.19 54.37
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20. retro_cjac_4123 67.69 62.14
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Download FASTA sequences of all ENSCJAG00000010529 retrocopies