Parental gene: | EEF1B2, ENSCPOG00000014496 |
| Aliases: | None |
| Description: | None |
| Organism: | Guinea Pig (Cavia porcellus) |
| Coordinates: | scaffold_13:39890338..39892825(+) |
>ENSCPOG00000014496
ATGGGTTTTGGAGACCTGAAAAGCCCCGCCGGCCTGCAGGTGCTCAACGATTACCTGGCGGACCGGAGCTACATCGAGGG
GTTCGTGCCCTCGCAAGCCGATGTGGCCGTGTTCGAAGCCATCGCCTGCCCGCCGCCCGCCGACTTGTTTCACGCCCTGC
GCTGGTACAATCACATCAAGTCTTACGAAAAGGAAAAGGCCAGTCTGCCAGGAGTGAAGAAAGCTTTGGGAAAGTATGGC
CCTGCTGATGTAGAAGACACCACCGGAAGTGGGGCTGCAGACAGCAAAGACGATGACGACATTGATCTCTTCGGGTCTGA
TGATGAAGAGGAAAGTGAAGAAGCAAAGAGGCTAAGGGAGGAACGGCTGGCACAGTACGAGTCCAAGAAAGCCAAAAAAC
CTGCACTTGTTGCCAAGTCTTCCATCTTGCTAGACGTGAAGCCCTGGGATGACGAGACAGACATGGGGAAGTTAGAGGAG
TGCGTCCGCAGCATTCAGGCCGACGGCTTGGTCTGGGGTTCCTCTAAACTGGTTCCAGTGGGCTATGGAATTAAAAAGCT
GCAGATACAGTGCGTGGTCGAAGATGATAAAGTCGGGACAGACCTGCTGGAGGAGCGGATCACTGCTTTCGAGGACTACG
TGCAGTCCATGGATGTGGCCGCCTTTAACAAAATCTAG
ATGGGTTTTGGAGACCTGAAAAGCCCCGCCGGCCTGCAGGTGCTCAACGATTACCTGGCGGACCGGAGCTACATCGAGGG
GTTCGTGCCCTCGCAAGCCGATGTGGCCGTGTTCGAAGCCATCGCCTGCCCGCCGCCCGCCGACTTGTTTCACGCCCTGC
GCTGGTACAATCACATCAAGTCTTACGAAAAGGAAAAGGCCAGTCTGCCAGGAGTGAAGAAAGCTTTGGGAAAGTATGGC
CCTGCTGATGTAGAAGACACCACCGGAAGTGGGGCTGCAGACAGCAAAGACGATGACGACATTGATCTCTTCGGGTCTGA
TGATGAAGAGGAAAGTGAAGAAGCAAAGAGGCTAAGGGAGGAACGGCTGGCACAGTACGAGTCCAAGAAAGCCAAAAAAC
CTGCACTTGTTGCCAAGTCTTCCATCTTGCTAGACGTGAAGCCCTGGGATGACGAGACAGACATGGGGAAGTTAGAGGAG
TGCGTCCGCAGCATTCAGGCCGACGGCTTGGTCTGGGGTTCCTCTAAACTGGTTCCAGTGGGCTATGGAATTAAAAAGCT
GCAGATACAGTGCGTGGTCGAAGATGATAAAGTCGGGACAGACCTGCTGGAGGAGCGGATCACTGCTTTCGAGGACTACG
TGCAGTCCATGGATGTGGCCGCCTTTAACAAAATCTAG
| Library | Parental gene expression (RPM) |
|---|---|
| SRP017611_liver | 127 .01 RPM |
| SRP017611_kidney | 110 .34 RPM |
| SRP017611_brain | 56 .48 RPM |
| SRP040447_lung | 135 .69 RPM |
| SRP040447_skeletal_muscle | 108 .89 RPM |
| Species | Parental gene accession | Homology type | Retrogenes number | |
|---|---|---|---|---|
| Canis familiaris | ENSCAFG00000029635 | possible_ortholog | 1 retrogene | |
| Callithrix jacchus | ENSCJAG00000005805 | possible_ortholog | 2 retrogenes | |
| Gorilla gorilla | ENSGGOG00000007002 | possible_ortholog | 2 retrogenes | |
| Macropus eugenii | ENSMEUG00000002654 | ortholog_one2one | 8 retrogenes | |
| Myotis lucifugus | ENSMLUG00000016602 | ortholog_one2one | 8 retrogenes | |
| Oryctolagus cuniculus | ENSOCUG00000009848 | ortholog_one2one | 4 retrogenes | |
| Oreochromis niloticus | ENSONIG00000017630 | ortholog_one2many | 1 retrogene | |
| Ochotona princeps | ENSOPRG00000017163 | ortholog_one2one | 3 retrogenes | |
| Oryzias latipes | ENSORLG00000018533 | ortholog_one2many | 1 retrogene | |
| Pongo abelii | ENSPPYG00000013107 | possible_ortholog | 7 retrogenes | |
| Sarcophilus harrisii | ENSSHAG00000017853 | ortholog_one2many | 1 retrogene | |
| Ictidomys tridecemlineatus | ENSSTOG00000005437 | possible_ortholog | 3 retrogenes | |
| Xiphophorus maculatus | ENSXMAG00000006050 | ortholog_one2many | 1 retrogene |
| # | RetrogeneDB ID | Identity (%) | Coverage (%) | ORF conservation | Expression evidence | RDV |
|---|---|---|---|---|---|---|
| 1. | retro_cpor_296 | 59.34 | 78.67 | Please wait, loading  | Please wait, loading | Please wait, loading |
| 2. | retro_cpor_1116 | 65.52 | 88.89 | Please wait, loading | Please wait, loading | Please wait, loading |
| 3. | retro_cpor_1381 | 68.52 | 70.67 | Please wait, loading | Please wait, loading | Please wait, loading |
| 4. | retro_cpor_1407 | 72.26 | 60.00 | Please wait, loading | Please wait, loading | Please wait, loading |
Download FASTA sequences of all ENSCPOG00000014496 retrocopies