Parental gene:

EEF1B3, ENSOCUG00000009848

Aliases:EEF1B3, EEF1B, EF1B
Description:eukaryotic translation elongation factor 1 beta 3 (EEF1B3), mRNA [Source:RefSeq mRNA;Acc:NM_001082399]
Organism:Rabbit (Oryctolagus cuniculus)
Coordinates:7:146948801..146951720(+)


>ENSOCUG00000009848
ATGGGTTTCGGAGACCTGAAAAGCCCCGCCGGCCTCCAGGTGCTCAACGATTACCTGGCGGACAAGAGCTACATCGAGGG
GTATGTGCCGTCCCAGGCAGATGTGGCAGTGTTCGAAGCCGTCTCCGGCCCGCCGCCTGCCGACTTGTGTCATGCCCTAC
GCTGGTATAATCACATCAAGTCCTACGAGAAGGAGAAGGCCAGCCTGCCAGGAATAAAAAAAGCTTTGGGCAGGTATGGC
CCTGCAGATGTGGAAGACACCACAGGAAGTGGAGCCACAGATAGTAAAGATGACGATGACATTGACCTCTTTGGATCTGA
TGATGAGGAGGAAAGTGAAGAGGCAAAGAGGTTAAGGGAAGAACGACTTGCACAGTATGAGTCAAAGAAAGCCAAAAAAC
CTGCACTTGTTGCCAAGTCTTCCATCTTACTAGATGTGAAACCCTGGGATGATGAAACAGATATGGTAAAATTGGAGGAG
TGTGTCAGAAGCATTCAAGCAGATGGCTTGGTCTGGGGCTCCTCTAAACTAGTTCCAGTGGGGTATGGAATTAAGAAGCT
TCAAATACAGTGTGTAGTTGAAGATGACAAAGTTGGAACAGATATGCTGGAGGAGCAGATCACGGCTTTTGAGGACTATG
TGCAATCCATGGATGTGGCTGCTTTCAACAAGATCTAA

Library Parental gene expression (RPM)
SRP017611_brain 124 .78 RPM
SRP017611_kidney 188 .93 RPM
SRP017611_liver 93 .72 RPM



Species Parental gene accession Homology type Retrogenes number
Canis familiaris ENSCAFG00000029635 possible_ortholog 1 retrogene
retro_cfam_56,
Callithrix jacchus ENSCJAG00000005805 possible_ortholog 2 retrogenes
retro_cjac_176, retro_cjac_341,
Cavia porcellus ENSCPOG00000014496 ortholog_one2one 4 retrogenes
retro_cpor_1116, retro_cpor_1381, retro_cpor_1407, retro_cpor_296,
Gorilla gorilla ENSGGOG00000007002 possible_ortholog 2 retrogenes
retro_ggor_134, retro_ggor_2000,
Macropus eugenii ENSMEUG00000002654 ortholog_one2one 8 retrogenes
retro_meug_1418, retro_meug_1846, retro_meug_1917, retro_meug_240, retro_meug_241, retro_meug_52, retro_meug_775, retro_meug_949,
Myotis lucifugus ENSMLUG00000016602 ortholog_one2one 8 retrogenes
retro_mluc_1035, retro_mluc_1068, retro_mluc_1104, retro_mluc_1167, retro_mluc_1542, retro_mluc_1578, retro_mluc_1681, retro_mluc_1857,
Oreochromis niloticus ENSONIG00000017630 ortholog_one2many 1 retrogene
retro_onil_28,
Ochotona princeps ENSOPRG00000017163 ortholog_one2one 3 retrogenes
retro_opri_1192, retro_opri_294, retro_opri_748,
Oryzias latipes ENSORLG00000018533 ortholog_one2many 1 retrogene
retro_olat_16,
Pongo abelii ENSPPYG00000013107 possible_ortholog 7 retrogenes
retro_pabe_1251, retro_pabe_1656, retro_pabe_2163, retro_pabe_2389, retro_pabe_2419, retro_pabe_2746, retro_pabe_2876,
Sarcophilus harrisii ENSSHAG00000017853 ortholog_one2many 1 retrogene
retro_shar_208,
Ictidomys tridecemlineatus ENSSTOG00000005437 possible_ortholog 3 retrogenes
retro_itri_1263, retro_itri_813, retro_itri_873,
Xiphophorus maculatus ENSXMAG00000006050 ortholog_one2many 1 retrogene
retro_xmac_21,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_ocun_544 67.76 65.78
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2. retro_ocun_922 65.66 71.11
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3. retro_ocun_1014 96.02 100.00
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4. retro_ocun_1240 59.17 51.11
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Download FASTA sequences of all ENSOCUG00000009848 retrocopies