RetrogeneDB ID: | retro_cpor_1407 | ||
Retrocopylocation | Organism: | Guinea Pig (Cavia porcellus) | |
Coordinates: | scaffold_8:47855351..47855739(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | EEF1B2 | ||
Ensembl ID: | ENSCPOG00000014496 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 72.26 % |
Parental protein coverage: | 60. % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 2 |
Parental | MGFGDLKSPAGLQVLNDYLADRSYI-EGFVPSQADVAVFEAIACPPPADLFHALRWYNHIKSYEKEKASL |
MGF.DLKSP..L.VLNDY.AD.SYI..G..PS.ADV....A...PPPA.L..ALRWYNHIK.YEKEKASL | |
Retrocopy | MGFRDLKSPTSL*VLNDYPADKSYI<QGVWPS*ADV----AVSRPPPANLCYALRWYNHIKPYEKEKASL |
Parental | PGVKKALGKYGPADVEDTTGSGAADSKDDDDIDLFGSDDEEESEE-AKRLREERLAQYESKKAKKPA |
PGVKKALGK.GPA.VEDTTG.GA.D.K.DDDIDLFGSDDEE.SEE.A.RLRE..LA..ES.KAK..A | |
Retrocopy | PGVKKALGKCGPANVEDTTGRGATDNKEDDDIDLFGSDDEE*SEE<AQRLREKPLA-HESMKAKSSA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 56 .48 RPM |
SRP017611_kidney | 0 .00 RPM | 110 .34 RPM |
SRP017611_liver | 0 .00 RPM | 127 .01 RPM |
SRP040447_lung | 0 .00 RPM | 135 .69 RPM |
SRP040447_skeletal_muscle | 0 .00 RPM | 108 .89 RPM |
Species | Parental gene accession | Retrocopies number | |
---|---|---|---|
Canis familiaris | ENSCAFG00000029635 | 1 retrocopy | |
Callithrix jacchus | ENSCJAG00000005805 | 2 retrocopies | |
Cavia porcellus | ENSCPOG00000014496 | 4 retrocopies | |
Gorilla gorilla | ENSGGOG00000007002 | 2 retrocopies | |
Macropus eugenii | ENSMEUG00000002654 | 8 retrocopies | |
Myotis lucifugus | ENSMLUG00000016602 | 8 retrocopies | |
Oryctolagus cuniculus | ENSOCUG00000009848 | 4 retrocopies | |
Oreochromis niloticus | ENSONIG00000017630 | 1 retrocopy | |
Ochotona princeps | ENSOPRG00000017163 | 3 retrocopies | |
Oryzias latipes | ENSORLG00000018533 | 1 retrocopy | |
Pongo abelii | ENSPPYG00000013107 | 7 retrocopies | |
Sarcophilus harrisii | ENSSHAG00000017853 | 1 retrocopy | |
Ictidomys tridecemlineatus | ENSSTOG00000005437 | 3 retrocopies | |
Xiphophorus maculatus | ENSXMAG00000006050 | 1 retrocopy |