Parental gene:

ST13, ENSSSCG00000000071

Aliases:None
Description:suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) [Source:HGNC Symbol;Acc:11343]
Organism:Pig (Sus scrofa)
Coordinates:5:4763715..4796381(+)


>ENSSSCG00000000071
ATGGACCCCCGCAAAGTGAGCGAACTTCGAGCCTTCGTGAAAATGTGTAAGCAGGACCCGAGCGTTCTGCACACCGAGGA
AATGCGCTTCCTGAGGGAGTGGGTGGAGAGCATGGGGGGTAAAATACCACCTGCTACTCATAAAACTAAATCAGAAGAAA
ATACCAAGGAAGAAAAAACAGATAGTAAGAAGGTGGAGGAAAACATAAAGACAGATGAACCGTCAAGTGAGGAAAGTGAT
CTGGAAATTGACAATGAAGGTGTGATTGAACCAGACACTGATGCTCCTCAGGAAATGGGAGATGAAAATGTAGAGATAAC
CGAGGAGATGATGGATCAGGCAAATGATAAAAAAGTGGCTGCCATCGATGCCCTAAATAATGGTGAACTGCAGAAAGCCA
TTGACTTGTTCACAGATGCCATCAAGCTAAATCCTCGTTTGGCCATTCTGTATGCCAAGAGAGCCAGTGTCTTCATCAAA
TTACAGAAGCCAAATGCTGCCATCCGAGACTGTGACAGAGCTATTGAAATAAATCCTGATTCAGCTCAGCCATACAAGTG
GCGAGGGAAAGCACACAGACTTTTGGGCCATTGGGAAGAAGCAGCCCATGATCTTGCCCTTGCCTGTAAGCTGGATTATG
ATGAAGATGCTAGTGCAATGCTGAAAGAAGTTCAACCAAGGGCCCAAAAAATTGCTGAACATCGGCGCAAGTATGAGCGA
AAACGTGAAGAGCGAGAGATAAAAGAAAGAATAGAAAGGGTTAAGAAGGCTCGGGAAGAACATGAGAGAGCCCAGAGGGA
GGAAGAAGCCAGACGGCAATCAGGAGCTCAGTATGGCTCTTTTCCAGGTGGTTTTCCTGGGGGAATGCCTGGTAATTTTC
CTGGAGGAATGCCTGGAATGGGAGGGAGCATGCCTGGAATGGCAGGAATGCCTGGGCTCAATGAAATTCTTAGTGATCCC
GAGGTTCTTGCAGCCATGCAGGATCCAGAAGTTATGGTGGCCTTCCAGGATGTGGCGCAGAACCCAGCAAATATGTCGAA
ATATCAGAGCAACCCAAAGGTTATGAATCTCATCAGTAAATTGTCAGCCAAATTTGGAGGTCAAGCGTAA

Library Parental gene expression (RPM)
SRP014902_placenta 119 .59 RPM
SRP014902_testis 328 .16 RPM
SRP018288_heart 123 .76 RPM
SRP018288_kidney 319 .75 RPM
SRP018288_liver 320 .46 RPM
SRP018288_lung 245 .60 RPM
SRP018856_adipose 746 .64 RPM
SRP035408_brain 195 .90 RPM
SRP035408_liver 345 .22 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000005227 possible_ortholog 1 retrogene
retro_acar_2,
Ailuropoda melanoleuca ENSAMEG00000013880 possible_ortholog 1 retrogene
retro_amel_135,
Bos taurus ENSBTAG00000006202 possible_ortholog 4 retrogenes
retro_btau_254, retro_btau_427, retro_btau_621, retro_btau_658,
Canis familiaris ENSCAFG00000001139 possible_ortholog 14 retrogenes
retro_cfam_1029, retro_cfam_1101, retro_cfam_1122, retro_cfam_1239, retro_cfam_1467, retro_cfam_1830, retro_cfam_1950, retro_cfam_1958, retro_cfam_247, retro_cfam_262, retro_cfam_582, retro_cfam_808, retro_cfam_901, retro_cfam_969,
Choloepus hoffmanni ENSCHOG00000012676 ortholog_one2one 1 retrogene
retro_chof_2222,
Callithrix jacchus ENSCJAG00000004644 ortholog_one2many 11 retrogenes
retro_cjac_1843, retro_cjac_1953, retro_cjac_2177, retro_cjac_2275, retro_cjac_2789, retro_cjac_3123, retro_cjac_3570, retro_cjac_4019, retro_cjac_488, retro_cjac_640, retro_cjac_685,
Cavia porcellus ENSCPOG00000002290 ortholog_one2one 4 retrogenes
retro_cpor_1394, retro_cpor_1477, retro_cpor_166, retro_cpor_961,
Felis catus ENSFCAG00000011847 possible_ortholog 2 retrogenes
retro_fcat_920, retro_fcat_987,
Homo sapiens ENSG00000100380 ortholog_one2one 16 retrogenes
retro_hsap_1055, retro_hsap_1203, retro_hsap_178, retro_hsap_201, retro_hsap_2078, retro_hsap_2189, retro_hsap_2853, retro_hsap_3206, retro_hsap_3907, retro_hsap_4009, retro_hsap_4876, retro_hsap_500, retro_hsap_619, retro_hsap_756, retro_hsap_812, retro_hsap_986,
Gorilla gorilla ENSGGOG00000026747 ortholog_one2one 16 retrogenes
retro_ggor_1600, retro_ggor_1734, retro_ggor_1791, retro_ggor_1975, retro_ggor_2177, retro_ggor_2634, retro_ggor_2692, retro_ggor_277, retro_ggor_3045, retro_ggor_629, retro_ggor_666, retro_ggor_749, retro_ggor_788, retro_ggor_832, retro_ggor_833, retro_ggor_938,
Microcebus murinus ENSMICG00000008875 ortholog_one2one 2 retrogenes
retro_mmur_481, retro_mmur_954,
Myotis lucifugus ENSMLUG00000007764 ortholog_one2one 2 retrogenes
retro_mluc_1088, retro_mluc_2021,
Macaca mulatta ENSMMUG00000019118 ortholog_one2many 3 retrogenes
retro_mmul_1842, retro_mmul_402, retro_mmul_438,
Monodelphis domestica ENSMODG00000013042 ortholog_one2many 2 retrogenes
retro_mdom_1087, retro_mdom_31,
Mus musculus ENSMUSG00000022403 ortholog_one2one 2 retrogenes
retro_mmus_2997, retro_mmus_651,
Nomascus leucogenys ENSNLEG00000015378 ortholog_one2one 17 retrogenes
retro_nleu_1142, retro_nleu_1155, retro_nleu_1606, retro_nleu_1852, retro_nleu_2075, retro_nleu_2088, retro_nleu_2376, retro_nleu_2404, retro_nleu_247, retro_nleu_2555, retro_nleu_2765, retro_nleu_3121, retro_nleu_3122, retro_nleu_319, retro_nleu_447, retro_nleu_552, retro_nleu_988,
Otolemur garnettii ENSOGAG00000016932 ortholog_one2many 1 retrogene
retro_ogar_224,
Pongo abelii ENSPPYG00000011858 ortholog_one2many 14 retrogenes
retro_pabe_1004, retro_pabe_2181, retro_pabe_2361, retro_pabe_2657, retro_pabe_2885, retro_pabe_3183, retro_pabe_3673, retro_pabe_3794, retro_pabe_437, retro_pabe_554, retro_pabe_727, retro_pabe_763, retro_pabe_798, retro_pabe_880,
Pteropus vampyrus ENSPVAG00000011908 ortholog_one2one 2 retrogenes
retro_pvam_1104, retro_pvam_393,
Rattus norvegicus ENSRNOG00000019070 ortholog_one2one 8 retrogenes
retro_rnor_1360, retro_rnor_1725, retro_rnor_1798, retro_rnor_1976, retro_rnor_2204, retro_rnor_2372, retro_rnor_2481, retro_rnor_2543,
Sarcophilus harrisii ENSSHAG00000000319 ortholog_one2many 2 retrogenes
retro_shar_70, retro_shar_767,
Ictidomys tridecemlineatus ENSSTOG00000003165 ortholog_one2many 1 retrogene
retro_itri_88,

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_sscr_428 80.23 70.73
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Download FASTA sequences of all ENSSSCG00000000071 retrocopies