RetrogeneDB ID: | retro_hsap_756 | ||
Retrocopylocation | Organism: | Human (Homo sapiens) | |
Coordinates: | 11:18283528..18284635(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSG00000212789 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ST13 | ||
Ensembl ID: | ENSG00000100380 | ||
Aliases: | ST13, AAG2, FAM10A1, FAM10A4, HIP, HOP, HSPABP, HSPABP1, P48, PRO0786, SNC6 | ||
Description: | suppression of tumorigenicity 13 (colon carcinoma) (Hsp70 interacting protein) [Source:HGNC Symbol;Acc:11343] |
Percent Identity: | 96.21 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MDPRKVNELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKVPPATQKAKSEENTKEEKPDSKKVEEDLK |
MDP.KVNELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKVPPATQKAKSEENTKEEKPDSKKVEEDLK | |
Retrocopy | MDPCKVNELRAFVKMCKQDPSVLHTEEMRFLREWVESMGGKVPPATQKAKSEENTKEEKPDSKKVEEDLK |
Parental | ADEPSSEESDLEIDKEGVIEPDTDAPQEMGDENAEITEEMMDQANDKKVAAIEALNDGELQKAIDLFTDA |
ADEPS.EESDLEIDKEGVIEPDTDAPQEMGDEN.EITEEMMDQANDKKVAAIE.LNDGELQKAIDLFTDA | |
Retrocopy | ADEPSTEESDLEIDKEGVIEPDTDAPQEMGDENVEITEEMMDQANDKKVAAIEVLNDGELQKAIDLFTDA |
Parental | IKLNPRLAILYAKRASVFVKLQKPNAAIRDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLALACK |
IKLNPRLAILYAKRASVFVKLQKPNAAI.DCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLA.ACK | |
Retrocopy | IKLNPRLAILYAKRASVFVKLQKPNAAIQDCDRAIEINPDSAQPYKWRGKAHRLLGHWEEAAHDLAFACK |
Parental | LDYDEDASAMLKEVQPRAQKIAEHRRKYERKREEREIKERIERVKKAREEHERAQREEEARRQSGAQYGS |
LDYDEDASAMLKEVQPRAQKIAEH.RKYERK.EEREIKERIERVKKA.EE.ERAQREEEARRQSGA.YG. | |
Retrocopy | LDYDEDASAMLKEVQPRAQKIAEHWRKYERKHEEREIKERIERVKKAQEEQERAQREEEARRQSGAHYGP |
Parental | FPGGFPGGMPGNFPGGMPGMGGGMPGMAGMPGLNEILSDPEVLAAMQDPEVMVAFQDVAQNPANMSKYQS |
FPGGFPGGMPGNFPGGMPGMGG.MPGMAGMPGLNEILSDPE.LAAMQDPEVMVAFQDVAQNPANMSKYQS | |
Retrocopy | FPGGFPGGMPGNFPGGMPGMGGDMPGMAGMPGLNEILSDPEALAAMQDPEVMVAFQDVAQNPANMSKYQS |
Parental | NPKVMNLISKLSAKFGGQA |
NPKVMNLISKLSAKFGGQA | |
Retrocopy | NPKVMNLISKLSAKFGGQA |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
bodymap2_adipose | 0 .12 RPM | 322 .88 RPM |
bodymap2_adrenal | 0 .10 RPM | 198 .92 RPM |
bodymap2_brain | 0 .07 RPM | 280 .81 RPM |
bodymap2_breast | 0 .27 RPM | 341 .58 RPM |
bodymap2_colon | 0 .31 RPM | 497 .30 RPM |
bodymap2_heart | 0 .11 RPM | 152 .58 RPM |
bodymap2_kidney | 0 .12 RPM | 278 .86 RPM |
bodymap2_liver | 0 .09 RPM | 135 .78 RPM |
bodymap2_lung | 0 .04 RPM | 230 .08 RPM |
bodymap2_lymph_node | 0 .24 RPM | 242 .38 RPM |
bodymap2_ovary | 0 .67 RPM | 802 .26 RPM |
bodymap2_prostate | 0 .19 RPM | 455 .26 RPM |
bodymap2_skeletal_muscle | 0 .27 RPM | 303 .76 RPM |
bodymap2_testis | 0 .06 RPM | 342 .45 RPM |
bodymap2_thyroid | 0 .36 RPM | 441 .59 RPM |
bodymap2_white_blood_cells | 0 .08 RPM | 169 .02 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_12441 | 700 libraries | 653 libraries | 451 libraries | 21 libraries | 4 libraries |
Species | RetrogeneDB ID |
---|---|
Gorilla gorilla | retro_ggor_629 |
Pongo abelii | retro_pabe_763 |
Library | Retrogene expression |
---|---|
CEU_NA11831 | 0 .24 RPM |
CEU_NA11843 | 0 .03 RPM |
CEU_NA11930 | 0 .20 RPM |
CEU_NA12004 | 0 .04 RPM |
CEU_NA12400 | 0 .07 RPM |
CEU_NA12751 | 0 .10 RPM |
CEU_NA12760 | 0 .09 RPM |
CEU_NA12827 | 0 .09 RPM |
CEU_NA12872 | 0 .03 RPM |
CEU_NA12873 | 0 .19 RPM |
FIN_HG00183 | 0 .11 RPM |
FIN_HG00277 | 0 .07 RPM |
FIN_HG00315 | 0 .25 RPM |
FIN_HG00321 | 0 .06 RPM |
FIN_HG00328 | 0 .09 RPM |
FIN_HG00338 | 0 .06 RPM |
FIN_HG00349 | 0 .17 RPM |
FIN_HG00375 | 0 .07 RPM |
FIN_HG00377 | 0 .13 RPM |
FIN_HG00378 | 0 .23 RPM |
GBR_HG00099 | 0 .23 RPM |
GBR_HG00111 | 0 .06 RPM |
GBR_HG00114 | 0 .03 RPM |
GBR_HG00119 | 0 .05 RPM |
GBR_HG00131 | 0 .09 RPM |
GBR_HG00133 | 0 .05 RPM |
GBR_HG00134 | 0 .07 RPM |
GBR_HG00137 | 0 .05 RPM |
GBR_HG00142 | 0 .03 RPM |
GBR_HG00143 | 0 .13 RPM |
TSI_NA20512 | 0 .03 RPM |
TSI_NA20513 | 0 .05 RPM |
TSI_NA20518 | 0 .11 RPM |
TSI_NA20532 | 0 .14 RPM |
TSI_NA20538 | 0 .28 RPM |
TSI_NA20756 | 0 .06 RPM |
TSI_NA20765 | 0 .15 RPM |
TSI_NA20771 | 0 .14 RPM |
TSI_NA20786 | 0 .10 RPM |
TSI_NA20798 | 0 .00 RPM |
YRI_NA18870 | 0 .10 RPM |
YRI_NA18907 | 0 .00 RPM |
YRI_NA18916 | 0 .13 RPM |
YRI_NA19093 | 0 .05 RPM |
YRI_NA19099 | 0 .19 RPM |
YRI_NA19114 | 0 .10 RPM |
YRI_NA19118 | 0 .12 RPM |
YRI_NA19213 | 0 .17 RPM |
YRI_NA19214 | 0 .07 RPM |
YRI_NA19223 | 0 .06 RPM |