RetrogeneDB ID: | retro_amel_1121 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192920.1:443678..444180(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSAMEG00000013344 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 69.14 % |
Parental protein coverage: | 92.9 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 5 |
Parental | PRKRTV-TTVMAGILRSIVQRPPGRLQ-TVTKGMESLICTDWIRHKFTKSRIPDKVFQPSPADHEKYGG- |
P.KRT..T..MAG.L..IVQRPPG.LQ...T..ME.LICTDWI.H.FTKSRIP.KVFQPSP.DHEKYGG. | |
Retrocopy | PLKRTA<TALMAGLLH*IVQRPPG*LQ<AWTHCMEPLICTDWICHTFTKSRIPNKVFQPSPTDHEKYGG< |
Parental | DPQH-PHKLHIVTRIKSIKRRPYWEKDTIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLIRIKPLKLPQG |
.PQH.PHKLHIVTR.KS.KRRPYW.KD.IKMLG.EKA.TPQ.HKNIPSVNA...VVK.L.RI.PLK.PQG | |
Retrocopy | HPQH<PHKLHIVTRTKSTKRRPYWGKD-IKMLG*EKARTPQAHKNIPSVNAEPQVVKPLVRIRPLKSPQG |
Parental | LPSEE-DMSNTCLKSTGELVVRWRLNPIDQEAVKS |
L..EE...SN.C..S.G..VV.W...PI.QE.V.S | |
Retrocopy | LSAEE<GTSNVCPGSPGDSVVPWHQHPIHQESVMS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |