RetrogeneDB ID: | retro_rnor_916 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 13:52047874..52048345(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL30 | ||
Ensembl ID: | ENSRNOG00000018511 | ||
Aliases: | None | ||
Description: | 39S ribosomal protein L30, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C2C1] |
Percent Identity: | 86.25 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | MAGVLRSVFQRPPGRLQTVKKGAESLIGTEWIRHKFTRSRIPDKVFQPRPEDHEKYGGDPQNPHKLHIVT |
MAGVL.SVFQRPPGR.QTVKKGAES.IGTEWI.HKF.RS.I.DKVFQPRPEDHEKYG.D...PHKLHIVT | |
Retrocopy | MAGVLHSVFQRPPGRFQTVKKGAESFIGTEWICHKFLRSKISDKVFQPRPEDHEKYGWD---PHKLHIVT |
Parental | RIRSTKRRPYWEKDTIKMLGLQKAHSPQIHKNIPSVNAKLKVVKHLIRIQPLKLPQGLPTEETMSSTCLK |
.I.STKR..YWE..TIKMLGL.KAHSPQIHK.IPSVNAKLKVVKHLIRIQPLKLP.GLPTEETMSS.CLK | |
Retrocopy | KIKSTKRCQYWENCTIKMLGL*KAHSPQIHKDIPSVNAKLKVVKHLIRIQPLKLPHGLPTEETMSSVCLK |
Parental | STGELVVQWHLKPVEQEAKS |
STGELVVQW.LKPVEQEAKS | |
Retrocopy | STGELVVQWLLKPVEQEAKS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .29 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .42 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |