RetrogeneDB ID: | retro_mmus_1171 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | 14:8687418..8687831(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Mrpl30 | ||
Ensembl ID: | ENSMUSG00000026087 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L30 [Source:MGI Symbol;Acc:MGI:1333820] |
Percent Identity: | 70.5 % |
Parental protein coverage: | 86.25 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 1 |
Parental | MAGVLRSAFPRPPCRLQTVKKGAESLIGTEWIRHKFTKSRIPDKVFQPKPEDHEKYGGDPQNPHKLHIVT |
M..VL.S.F.R.P.RLQ.VK.G.ESLI...WI.HKFT.SRIPDK.F.P.PEDHEKYG...QNPHKLHI.T | |
Retrocopy | MLRVLSSGFQRAPARLQIVKMGVESLISRVWIPHKFTRSRIPDKLF*PIPEDHEKYGWNTQNPHKLHILT |
Parental | RIRSTKRRPYWEKDTIKMLGLQKAHSPQIHKNI-PSVNAKLKVVKHLIRIQPLKLPQGLPTEETMSSTC |
.IR.TKR.PY.EK.TIKM..L.KAHSPQIHKNI.P..NAK.K.VK..I.IQPLKLPQGLPTEE..SS.C | |
Retrocopy | KIRNTKRHPY*EKSTIKMPRL*KAHSPQIHKNI<PVANAKVKEVKRVICIQPLKLPQGLPTEENISSLC |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .00 RPM | 30 .11 RPM |
SRP007412_cerebellum | 0 .00 RPM | 18 .71 RPM |
SRP007412_heart | 0 .00 RPM | 68 .21 RPM |
SRP007412_kidney | 0 .00 RPM | 34 .23 RPM |
SRP007412_liver | 0 .00 RPM | 25 .01 RPM |
SRP007412_testis | 0 .00 RPM | 19 .94 RPM |