RetrogeneDB ID: | retro_mmus_3680 | ||
Retrocopylocation | Organism: | Mouse (Mus musculus) | |
Coordinates: | X:104382158..104382506(-) | ||
Located in intron of: | ENSMUSG00000031333 | ||
Retrocopyinformation | Ensembl ID: | ENSMUSG00000082996 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | Mrpl30 | ||
Ensembl ID: | ENSMUSG00000026087 | ||
Aliases: | None | ||
Description: | mitochondrial ribosomal protein L30 [Source:MGI Symbol;Acc:MGI:1333820] |
Percent Identity: | 89.66 % |
Parental protein coverage: | 72.5 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MAGVLRSAFPRPPCRLQTVKKGAESLIGTEWIRHKFTKSRIPDKVFQPKPEDHEKYGGDPQNPHKLHIVT |
MAGVLRS.F.RPP.RLQTVKKGAESLIG.EWI.HKFTKSRIPDK.FQPKPE.HEKYGGDPQNPHKLHIVT | |
Retrocopy | MAGVLRSMFQRPPGRLQTVKKGAESLIGIEWICHKFTKSRIPDKLFQPKPEYHEKYGGDPQNPHKLHIVT |
Parental | RIRSTKRRPYWEKDTIKMLGLQKAHSPQIHKNIPSVNAKLKVVKHL |
RIRSTKR.PYWEKDTIKMLGLQKAHSPQIHKNIPSVNAKLK....L | |
Retrocopy | RIRSTKRHPYWEKDTIKMLGLQKAHSPQIHKNIPSVNAKLKRIQPL |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .02 RPM | 30 .11 RPM |
SRP007412_cerebellum | 0 .00 RPM | 18 .71 RPM |
SRP007412_heart | 0 .03 RPM | 68 .21 RPM |
SRP007412_kidney | 0 .02 RPM | 34 .23 RPM |
SRP007412_liver | 0 .05 RPM | 25 .01 RPM |
SRP007412_testis | 0 .00 RPM | 19 .94 RPM |
TSS No. | TSS Name | TSS expression level (Expr) in TPM range: | ||||
---|---|---|---|---|---|---|
no expression | 0 < Expr ≤ 1 | 1 < Expr ≤ 5 | 5 < Expr ≤ 10 | Expr > 10 | ||
TSS #1 | TSS_154718 | 412 libraries | 536 libraries | 123 libraries | 1 library | 0 libraries |