RetrogeneDB ID: | retro_rnor_2873 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | X:138890198..138890669(+) | ||
Located in intron of: | ENSRNOG00000030880 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL30 | ||
Ensembl ID: | ENSRNOG00000018511 | ||
Aliases: | None | ||
Description: | 39S ribosomal protein L30, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C2C1] |
Percent Identity: | 81.13 % |
Parental protein coverage: | 98.12 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | GVLRSVFQRPPGRL-QTVKKGAESLIGTEWIRHKFTRSRIPDKVFQPRPEDHEKYGGDPQNPHK-LHIVT |
GVL.SVFQRP.GRL.QTVKKGAESLI..EWIRHK..RSRI..K.FQPRP.DHEK.GGDPQNP.K.LHIVT | |
Retrocopy | GVLYSVFQRPSGRL<QTVKKGAESLISMEWIRHKCNRSRIAHKLFQPRPKDHEKCGGDPQNPQK>LHIVT |
Parental | RIRSTKRRPYWEKDTIKMLGLQKAHSPQIHKNIPSVNAKLKVVKHLIRIQPLKLPQGLPTEETMSSTCLK |
RIRS.KR.PYW.KD.IKML.LQKA...QIH.NIPSVNAKL...KHLI.I.PLKLPQGLPTEETMS..CLK | |
Retrocopy | RIRSSKRWPYWGKDAIKMLRLQKADNSQIH*NIPSVNAKLNLIKHLIGIHPLKLPQGLPTEETMSRRCLK |
Parental | STGELVVQWHLKPVEQEAK |
STGELVVQWHLKPVEQEAK | |
Retrocopy | STGELVVQWHLKPVEQEAK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .29 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .42 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |