RetrogeneDB ID: | retro_rnor_2683 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 9:50244494..50244951(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL30 | ||
Ensembl ID: | ENSRNOG00000018511 | ||
Aliases: | None | ||
Description: | 39S ribosomal protein L30, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C2C1] |
Percent Identity: | 71.61 % |
Parental protein coverage: | 95. % |
Number of stop codons detected: | 2 |
Number of frameshifts detected | 2 |
Parental | GVLRSVFQRPPGRLQTVKKGAESLIGTEWIRHKFTRSRIPDKVFQPRPEDHEK-YGGDPQNPHKLHIVTR |
G....V.QRPPGRLQTV.KGAES.IGTE.I.HKF...R.PDKVFQPR..DH.....G.PQ.PHKLHIVTR | |
Retrocopy | GFCAQVLQRPPGRLQTVNKGAESPIGTELICHKFIPPRSPDKVFQPRS*DHXXXFSGKPQSPHKLHIVTR |
Parental | IRSTKRRPYWEKDTIKMLGLQK-AHSPQIHKNIP-SVNAKLKVVKHLIRIQPLKLPQGLPTEETMSSTCL |
IRS.KR.PYW.....KMLGLQK.AHSPQIH.NIP.SVNA.LKVVK.LI.IQ.LKLPQGLPTE.TMSSTC. | |
Retrocopy | IRSAKRCPYWGENAFKMLGLQK<AHSPQIHTNIP<SVNANLKVVKNLIHIQSLKLPQGLPTEQTMSSTCF |
Parental | KSTGELVVQWHLKPV |
KS.G....QWHLKP. | |
Retrocopy | KSIG*VLMQWHLKPM |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .29 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .42 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |