RetrogeneDB ID: | retro_dnov_2348 | ||
Retrocopylocation | Organism: | Armadillo (Dasypus novemcinctus) | |
Coordinates: | scaffold_66669:3188..3476(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSDNOG00000018648 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 84.69 % |
Parental protein coverage: | 90.57 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 2 |
Parental | KKRITKL-MAGILRSIVQRPPDNLQTLTKGVESLICTDWIRHKFTRSRIPDKVFQISPADHEKYGGDPEH |
.KRI.KL..AGILRS.VQRPPDNLQTLTKGVESLIC.DWI.HKFTRSRIPDKV.Q.SPADHEK.GGDPEH | |
Retrocopy | QKRIPKL>TAGILRSMVQRPPDNLQTLTKGVESLICSDWICHKFTRSRIPDKVSQMSPADHEKCGGDPEH |
Parental | PHKLHVVTRI-KGVKGRPYWEKEIIKKL |
P.KLHVVTRI.KGVKGRP.W.KEIIK.L | |
Retrocopy | PPKLHVVTRI<KGVKGRP*WGKEIIKML |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP012922_ascending_colon | 0 .00 RPM | 18 .67 RPM |
SRP012922_cerebellum | 0 .00 RPM | 7 .70 RPM |
SRP012922_heart | 0 .00 RPM | 19 .49 RPM |
SRP012922_kidney | 0 .00 RPM | 17 .52 RPM |
SRP012922_liver | 0 .00 RPM | 11 .92 RPM |
SRP012922_lung | 0 .00 RPM | 14 .66 RPM |
SRP012922_quadricep_muscle | 0 .00 RPM | 16 .10 RPM |
SRP012922_spleen | 0 .00 RPM | 21 .75 RPM |