RetrogeneDB ID: | retro_fcat_196 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | A1:183187373..183187853(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSFCAG00000024233 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 66.25 % |
Parental protein coverage: | 99.38 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 0 |
Parental | AGILRSIVQKPPGGLQTVTKGVESLICTDWIRHKFTKSRIPDKVFQPSPADHEKYGGDPQHPHKLHIVTR |
AGI..S.V.KP.G.LQTV.KGVESLICT.WI...F..SRIPDK.FQPS.AD..KYG.DPQH.HKLH..TR | |
Retrocopy | AGISHSVVSKPAGRLQTVSKGVESLICTSWIHYSFSRSRIPDKMFQPSSADQ*KYGADPQHLHKLHAATR |
Parental | IKSTKRRPYWEKDIIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLIRIQPLKLPQGLPAEEDMSNTCLKS |
IKST.RRP.W..D..K...LEKAHTP.VHKNIP.VN.KLK...HLI...PLK.P..LPAEE.....CLKS | |
Retrocopy | IKSTRRRPEWGTDTMKVPSLEKAHTPRVHKNIPPVNVKLKADEHLITVKPLKPPPELPAEEASCHVCLKS |
Parental | TGELVVRWHLNPVDQEAVKS |
TG...V.WH.NPV.QEAV.S | |
Retrocopy | TGYSAVWWHGNPVLQEAVWS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .11 RPM | 4 .94 RPM |
SRP017611_kidney | 0 .00 RPM | 13 .19 RPM |
SRP017611_liver | 0 .00 RPM | 8 .39 RPM |