RetrogeneDB ID: | retro_ggor_783 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 12:31891455..31891891(+) | ||
Located in intron of: | ENSGGOG00000015036 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000185414 | ||
Ensembl ID: | ENSGGOG00000011677 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 76.19 % |
Parental protein coverage: | 85.88 % |
Number of stop codons detected: | 1 |
Number of frameshifts detected | 1 |
Parental | LQTVTKGVESLICTDWIRHKFTRSRIPEKVFQASPEDHEKYGGDPQNPHKLHIVTRIK-STRRRPYWEKD |
LQT.TKGV.SL...DWI.HKFTRSRIP.K.FQ.S..DHEKY..DPQNP.KLHIVTRIK.ST.R.PYWEKD | |
Retrocopy | LQTETKGVKSLVYIDWIHHKFTRSRIPYKAFQPSLADHEKYDTDPQNPQKLHIVTRIK>STKRCPYWEKD |
Parental | IIKMLGLEKAHTPQVHKNIPSVNAKLKVVKHLIRIKPLKLPQGLPTEENMSNTCLKSTGELVVQWHLKPV |
IIKML.LE..HT.QVHK.I.SVNAKLKVV....RIKPLKLPQG.PTEE.MS..CLKSTGEL.VQWHLK.V | |
Retrocopy | IIKMLRLENTHTHQVHKHIASVNAKLKVV*QSVRIKPLKLPQGFPTEEDMSKLCLKSTGEL-VQWHLKSV |
Parental | EQKAHES |
EQKA..S | |
Retrocopy | EQKAINS |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 33 .33 RPM |
SRP007412_cerebellum | 0 .00 RPM | 26 .75 RPM |
SRP007412_heart | 0 .03 RPM | 11 .57 RPM |
SRP007412_kidney | 0 .04 RPM | 46 .45 RPM |
SRP007412_liver | 0 .08 RPM | 25 .93 RPM |
SRP007412_testis | 0 .00 RPM | 23 .83 RPM |