RetrogeneDB ID: | retro_ggor_2343 | ||
Retrocopylocation | Organism: | Gorilla (Gorilla gorilla) | |
Coordinates: | 6:58605366..58605659(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | ENSG00000185414 | ||
Ensembl ID: | ENSGGOG00000011677 | ||
Aliases: | None | ||
Description: | None |
Percent Identity: | 89.9 % |
Parental protein coverage: | 57.65 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | VESLICTDWIRHKFTRSRIPEKVFQASPEDHEKYGGDPQNPHKLHIVTRIKSTRR-RPYWEKDIIKMLGL |
V.SLICTDWIRHKFTRSRIP.KVF.ASPEDHEKYGGDPQNPHKLHIVTRIKST...RPYWEKDIIKMLGL | |
Retrocopy | VWSLICTDWIRHKFTRSRIPDKVFHASPEDHEKYGGDPQNPHKLHIVTRIKSTKY<RPYWEKDIIKMLGL |
Parental | EKAHTPQVHKNIPSVNAKLKVVKHLIRIK |
EK.H.PQVH.NIPSVNAKLKVVKHLIRI. | |
Retrocopy | EKSHIPQVHQNIPSVNAKLKVVKHLIRIE |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain_prefrontal_cortex | 0 .00 RPM | 33 .33 RPM |
SRP007412_cerebellum | 0 .00 RPM | 26 .75 RPM |
SRP007412_heart | 0 .00 RPM | 11 .57 RPM |
SRP007412_kidney | 0 .00 RPM | 46 .45 RPM |
SRP007412_liver | 0 .00 RPM | 25 .93 RPM |
SRP007412_testis | 0 .00 RPM | 23 .83 RPM |
Species | RetrogeneDB ID |
---|---|
Homo sapiens | retro_hsap_3476 |
Pan troglodytes | retro_ptro_2356 |