RetrogeneDB ID: | retro_rnor_2018 | ||
Retrocopylocation | Organism: | Rat (Rattus norvegicus) | |
Coordinates: | 4:228161681..228161971(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | MRPL30 | ||
Ensembl ID: | ENSRNOG00000018511 | ||
Aliases: | None | ||
Description: | 39S ribosomal protein L30, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:P0C2C1] |
Percent Identity: | 86.73 % |
Parental protein coverage: | 60.62 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 1 |
Parental | MAGVLRSVFQRPPGRLQTVKKGAESLIGTEWIRHKFTRSRIPDKVFQPRPEDHEKYGGDPQNPHKLHIVT |
M...L.SVFQRPP.RLQTVKKGAESLI.TEWI.HKFTRSRIPDKVFQPRPEDH.KY.GDPQNPHKLHIVT | |
Retrocopy | MSRILCSVFQRPPSRLQTVKKGAESLISTEWIHHKFTRSRIPDKVFQPRPEDHKKYSGDPQNPHKLHIVT |
Parental | RIRSTKRRPYW-EKDTIKMLGLQKAHSP |
RIRSTKR.PYW.EKDTIKMLGLQKA..P | |
Retrocopy | RIRSTKRHPYW<EKDTIKMLGLQKAQKP |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 0 .29 RPM |
SRP017611_kidney | 0 .00 RPM | 0 .42 RPM |
SRP017611_liver | 0 .00 RPM | 0 .00 RPM |