RetrogeneDB ID: | retro_amel_373 | ||
Retrocopylocation | Organism: | Panda (Ailuropoda melanoleuca) | |
Coordinates: | GL192410.1:2246865..2247477(-) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS8 | ||
Ensembl ID: | ENSAMEG00000014147 | ||
Aliases: | None | ||
Description: | ribosomal protein S8 [Source:HGNC Symbol;Acc:10441] |
Percent Identity: | 73.11 % |
Parental protein coverage: | 100. % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 4 |
Parental | VGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVG-NFSWGS |
.GISRD.WH.R.KT.GKR.PYHKK.KY.LG..AA..K.G...IHTV....G.K...ALRLDVG.NFSW.S | |
Retrocopy | MGISRDHWHRRFKTRGKRSPYHKKQKYGLGCLAASAKTG---IHTVHIWRGSKRH-ALRLDVG>NFSWDS |
Parental | ECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLG-RKKGAKLTPEEEEI-L |
.C.T.KTRI.DVVYNASNNE.V..KTLVKN.IVLIDSTPY.QWYE...ALP....KKGA.LTPEEEEI.. | |
Retrocopy | KCYTHKTRIVDVVYNASNNEVVCPKTLVKNQIVLIDSTPYPQWYEPRDALPHT<HKKGARLTPEEEEI<F |
Parental | NKKRSKKIQKKYDERKK-NAKISSLLEEQFQQGKLLACIASRPGQCGRADGYVLEGKELEFYLRKIKARK |
N.KRSKKIQKKYDERKK.NAKISSLLE..FQ.GKLLAC.A.RPG.CGRADGYVLEGKELEF..RKIK..K | |
Retrocopy | NRKRSKKIQKKYDERKK>NAKISSLLEARFQHGKLLACLALRPGPCGRADGYVLEGKELEFHRRKIKVQK |
Parental | GK |
GK | |
Retrocopy | GK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |