Parental gene:

RPS8, ENSFCAG00000022996

Aliases:None
Description:ribosomal protein S8 [Source:HGNC Symbol;Acc:10441]
Organism:Cat (Felis catus)
Coordinates:C1:34363769..34513383(+)


>ENSFCAG00000022996
ATGGGCATCTCTCGGGACAACTGGCACAAGCGCCGCAAGACCGGGGGCAAGAGAAAGCCCTACCACAAGAAGCGGAAGTA
TGAGCTGGGACGCCCCGCTGCCAACACTAAGATTGGCCCCCGCCGTATACACACAGTCCGGGTTCGGGGAGGCAATAAGA
AGTACCGTGCCTTGAGGCTGGACGTGGGGAACTTCTCCTGGGGCTCTGAGTGTTGTACGCGCAAAACAAGGATTATTGAT
GTTGTCTACAATGCATCCAACAACGAACTGGTCCGCACCAAGACCTTGGTGAAGAACTGTATCGTGCTCATTGACAGCAC
ACCGTACCGGCAGTGGTACGAGTCCCACTATGCACTGCCCCTGGGCCGCAAGAAGGGGGCCAAGCTGACTCCCGAGGAGG
AAGAGATTTTAAACAAAAAACGATCAAAGAAAATTCAGAAGAAATATGATGAGAGGAAAAAGAATGCCAAAATAAGCAGT
CTTCTGGAGGAGCAGTTCCAGCAGGGCAAACTTCTTGCATGCATCGCTTCAAGACCAGGCCAGTGTGGCCGAGCAGATGG
CTATGTACTGGAGGGCAAGGAGCTAGAGTTCTATCTGAGGAAGAGATAG

Library Parental gene expression (RPM)
SRP017611_liver 208 .75 RPM
SRP017611_kidney 417 .90 RPM
SRP017611_brain 88 .26 RPM



Species Parental gene accession Homology type Retrogenes number
Anolis carolinensis ENSACAG00000015697 ortholog_one2many 1 retrogene
Ailuropoda melanoleuca ENSAMEG00000014147 possible_ortholog 3 retrogenes
Bos taurus ENSBTAG00000015285 possible_ortholog 2 retrogenes
Canis familiaris ENSCAFG00000004745 possible_ortholog 8 retrogenes
Choloepus hoffmanni ENSCHOG00000008785 ortholog_one2many 10 retrogenes
Callithrix jacchus ENSCJAG00000004197 possible_ortholog 5 retrogenes
Cavia porcellus ENSCPOG00000000723 possible_ortholog 3 retrogenes
Dasypus novemcinctus ENSDNOG00000025236 possible_ortholog 3 retrogenes
Dipodomys ordii ENSDORG00000009287 possible_ortholog 1 retrogene
Echinops telfairi ENSETEG00000004002 possible_ortholog 13 retrogenes
Gorilla gorilla ENSGGOG00000005645 possible_ortholog 5 retrogenes
Loxodonta africana ENSLAFG00000027596 possible_ortholog 3 retrogenes
Macropus eugenii ENSMEUG00000001388 possible_ortholog 1 retrogene
Microcebus murinus ENSMICG00000008024 possible_ortholog 4 retrogenes
Myotis lucifugus ENSMLUG00000001559 possible_ortholog 30 retrogenes
Macaca mulatta ENSMMUG00000015270 possible_ortholog 2 retrogenes
Monodelphis domestica ENSMODG00000028389 ortholog_one2many 1 retrogene
Mustela putorius furo ENSMPUG00000013485 possible_ortholog 6 retrogenes
Mus musculus ENSMUSG00000047675 possible_ortholog 33 retrogenes
Nomascus leucogenys ENSNLEG00000014147 ortholog_one2one 1 retrogene
Oryctolagus cuniculus ENSOCUG00000012476 possible_ortholog 1 retrogene
Otolemur garnettii ENSOGAG00000006922 possible_ortholog 16 retrogenes
Pongo abelii ENSPPYG00000001426 possible_ortholog 1 retrogene
Pteropus vampyrus ENSPVAG00000009859 possible_ortholog 10 retrogenes
Rattus norvegicus ENSRNOG00000018768 possible_ortholog 2 retrogenes
Sarcophilus harrisii ENSSHAG00000000111 possible_ortholog 5 retrogenes
Sus scrofa ENSSSCG00000003930 possible_ortholog 4 retrogenes
Tupaia belangeri ENSTBEG00000000418 possible_ortholog 20 retrogenes
Tarsius syrichta ENSTSYG00000005525 possible_ortholog 5 retrogenes

# RetrogeneDB ID Identity (%) Coverage (%) ORF conservation Expression evidence RDV
1. retro_fcat_200 59.07 91.58
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2. retro_fcat_456 62.87 99.50
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3. retro_fcat_962 52.69 81.19
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4. retro_fcat_1222 61.74 72.28
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Download FASTA sequences of all ENSFCAG00000022996 retrocopies