RetrogeneDB ID: | retro_mmul_275 | ||
Retrocopylocation | Organism: | Rhesus macaque (Macaca mulatta) | |
Coordinates: | 8:111357134..111357557(+) | ||
Located in intron of: | None | ||
Retrocopyinformation | Ensembl ID: | ENSMMUG00000028937 | |
Aliases: | None | ||
Status: | KNOWN_PROTEIN_CODING | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSMMUG00000015270 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S8 [Source:UniProtKB/TrEMBL;Acc:F7DV33] |
Percent Identity: | 95.71 % |
Parental protein coverage: | 67.31 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 0 |
Parental | MGISRDNWHKRRKTGGKRKPYHKKRKYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGSE |
MGISRDNWHKRRKTGGKRKPYHKK.KYELGRPAANTKIGP.RIHTV.VRGGNKKYRALRLDVGNFS.GSE | |
Retrocopy | MGISRDNWHKRRKTGGKRKPYHKKWKYELGRPAANTKIGPHRIHTVCVRGGNKKYRALRLDVGNFSRGSE |
Parental | CCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNKK |
CCTRKTRIIDVVYNASNNELVRTKTLVKNC.VLIDSTPYRQWYESHYALPLG.KKGAKLTPEEEEILNKK | |
Retrocopy | CCTRKTRIIDVVYNASNNELVRTKTLVKNCMVLIDSTPYRQWYESHYALPLGHKKGAKLTPEEEEILNKK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP007412_brain | 0 .11 RPM | 28 .91 RPM |
SRP007412_brain_prefrontal_cortex | 0 .08 RPM | 105 .83 RPM |
SRP007412_cerebellum | 0 .00 RPM | 38 .68 RPM |
SRP007412_heart | 0 .12 RPM | 86 .68 RPM |
SRP007412_kidney | 0 .00 RPM | 64 .32 RPM |
SRP007412_liver | 0 .00 RPM | 127 .10 RPM |
SRP007412_testis | 0 .00 RPM | 39 .05 RPM |