RetrogeneDB ID: | retro_cjac_951 | ||
Retrocopylocation | Organism: | Marmoset (Callithrix jacchus) | |
Coordinates: | 12:210963..211537(+) | ||
Located in intron of: | ENSCJAG00000011674 | ||
Retrocopyinformation | Ensembl ID: | ENSCJAG00000011730 | |
Aliases: | None | ||
Status: | KNOWN_PSEUDOGENE | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | None | ||
Ensembl ID: | ENSCJAG00000004197 | ||
Aliases: | None | ||
Description: | 40S ribosomal protein S8 [Source:UniProtKB/TrEMBL;Acc:F6PPW3] |
Percent Identity: | 77.27 % |
Parental protein coverage: | 92.79 % |
Number of stop codons detected: | 0 |
Number of frameshifts detected | 5 |
Parental | MGISRDNWHKRRKTGGKRKPYHKKR-KYELGRPAANTKIGPRRIHTVRVRGGNKKYRALRLDVGNFSWGS |
.GIS.DNWHK...TGGKRKP.HKKR.KYELGRPAANTK.GP..IHTV.V.GGNKKYRALR.DVG.FSWGS | |
Retrocopy | LGISWDNWHKHCTTGGKRKPHHKKR<KYELGRPAANTKMGPGCIHTVHVQGGNKKYRALRVDVGSFSWGS |
Parental | ECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYRQWYESHYALPLGRKKGAKLTPEEEEILNK |
EC...K.RII.VVYN.S.NELV.TKT.VKN.IVLIDSTP.RQWY..HYALPLG.KKGAKLTPEEEEILNK | |
Retrocopy | ECWAQKIRIINVVYNVSKNELVGTKTRVKNSIVLIDSTPHRQWYKTHYALPLGHKKGAKLTPEEEEILNK |
Parental | KRS-KKIQK-KYDERKKNAKI-SSLLEEQFQQGKLLA-CIASRPGQCGRADGYVLEGK |
K.S.KK....KYDERKKNA....S.L.EQFQQGKLL..CIASR.GQCGRADGYVL.G. | |
Retrocopy | KHS<KKLRR<KYDERKKNAQM<ESPLAEQFQQGKLLG<CIASRRGQCGRADGYVLAGR |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP051959_colon | 0 .67 RPM | 239 .34 RPM |
SRP051959_heart | 0 .75 RPM | 225 .64 RPM |
SRP051959_kidney | 0 .62 RPM | 199 .52 RPM |
SRP051959_liver | 0 .41 RPM | 312 .58 RPM |
SRP051959_lung | 0 .99 RPM | 272 .22 RPM |
SRP051959_lymph_node | 0 .94 RPM | 439 .66 RPM |
SRP051959_skeletal_muscle | 0 .63 RPM | 314 .27 RPM |
SRP051959_spleen | 0 .74 RPM | 381 .72 RPM |