RetrogeneDB ID: | retro_fcat_1222 | ||
Retrocopylocation | Organism: | Cat (Felis catus) | |
Coordinates: | C1:154157609..154158038(-) | ||
Located in intron of: | ENSFCAG00000030765 | ||
Retrocopyinformation | Ensembl ID: | None | |
Aliases: | None | ||
Status: | NOVEL | ||
Parental geneinformation | Parental gene summary: | ||
Parental gene symbol: | RPS8 | ||
Ensembl ID: | ENSFCAG00000022996 | ||
Aliases: | None | ||
Description: | ribosomal protein S8 [Source:HGNC Symbol;Acc:10441] |
Percent Identity: | 61.74 % |
Parental protein coverage: | 72.28 % |
Number of stop codons detected: | 3 |
Number of frameshifts detected | 3 |
Parental | RALRLDVGNFSWGSECCTRKTRIIDVVYNASNNELVRTKTLVKNCIVLIDSTPYR-QWYESHYALPLGRK |
RALRL.VGNF..GS.CCTRKTRII.VV.NASNNELV.TKTLV.NCIVLIDSTPY..QW.ES..AL.L..K | |
Retrocopy | RALRLAVGNFF*GSQCCTRKTRIINVVCNASNNELVSTKTLVNNCIVLIDSTPYD<QW*ESYCALSLCCK |
Parental | KGAKLTPEEEEILNKKRSKKIQKKYDERKKNAK-ISSLLEEQFQQGKLLACIASRPG-QCGRADGYVLEG |
KG..LTP..E....K....K............K.I..LL.E.FQQGKLLA..ASRP..QCG...GYVL.. | |
Retrocopy | KGTNLTP--EKL*TKNNQRKFGRNMMKGERMSK<INGLLKERFQQGKLLAYVASRPD<QCGGVGGYVLGD |
Parental | KELEFYLRK |
K.L..YLRK | |
Retrocopy | KKLKLYLRK |
* | Stop codon |
> | Forward frameshift by one nucleotide |
< | Reverse frameshift by one nucleotide |
Library | Retrocopy expression | Parental gene expression |
---|---|---|
SRP017611_brain | 0 .00 RPM | 88 .26 RPM |
SRP017611_kidney | 0 .00 RPM | 417 .90 RPM |
SRP017611_liver | 0 .00 RPM | 208 .75 RPM |